Update R-CMD-check-all.yml #9
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| name: R-CMD-check-month | |
| on: | |
| push: | |
| branches: [main] | |
| pull_request: | |
| branches: [main] | |
| jobs: | |
| # Job for Ubuntu | |
| R-CMD-check-ubuntu: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v2 | |
| - name: Set up R | |
| uses: r-lib/actions/setup-r@v2 | |
| - name: Cache system dependencies | |
| uses: actions/cache@v3 | |
| with: | |
| path: /usr/local | |
| key: ${{ runner.os }}-sysdeps-${{ hashFiles('**/DESCRIPTION') }}-${{ hashFiles('**/renv.lock') }} | |
| restore-keys: | | |
| ${{ runner.os }}-sysdeps- | |
| - name: Install system dependencies | |
| run: | | |
| sudo apt-get update && sudo apt-get install -y \ | |
| libudunits2-dev \ | |
| libgdal-dev \ | |
| libgeos-dev \ | |
| libproj-dev \ | |
| texlive \ | |
| texlive-latex-extra \ | |
| texlive-fonts-recommended \ | |
| texlive-fonts-extra \ | |
| texinfo \ | |
| ghostscript | |
| - name: Determine Cache Key | |
| id: cache-key | |
| run: | | |
| echo "CACHE_KEY=renv-$(date +%Y-%m)" >> $GITHUB_ENV | |
| - name: Cache R packages | |
| uses: actions/cache@v2 | |
| with: | |
| path: ~/.R/library | |
| key: ${{ runner.os }}-renv-${{ hashFiles('**/DESCRIPTION') }}-${{ env.CACHE_KEY }} | |
| restore-keys: | | |
| ${{ runner.os }}-renv- | |
| - name: Install R packages | |
| run: | | |
| R -e 'install.packages("devtools")' | |
| R -e 'install.packages("remotes")' | |
| R -e 'remotes::install_cran(c("terra", "sf", "rgbif", "CoordinateCleaner", "ClusterR", "FNN", "geometry", "cluster", "rnaturalearth", "mclust", "methods"))' | |
| - name: Check package | |
| run: | | |
| R CMD build . | |
| R CMD check *tar.gz | |
| - name: Display installation log on failure | |
| if: failure() | |
| run: cat gbif.range.Rcheck/00install.out | |
| - name: Display check log on failure | |
| if: failure() | |
| run: cat gbif.range.Rcheck/00check.log | |
| - name: Upload check results | |
| if: always() | |
| uses: actions/upload-artifact@v2 | |
| with: | |
| name: R-CMD-check-results | |
| path: check/*.Rcheck |