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DOC: Clarify usage
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cookpa committed Feb 3, 2025
1 parent 2f92159 commit 638095d
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8 changes: 4 additions & 4 deletions Examples/antsApplyTransforms.cxx
Original file line number Diff line number Diff line change
Expand Up @@ -1042,15 +1042,15 @@ antsApplyTransformsInitializeCommandLineOptions(itk::ants::CommandLineParser * p

{
std::string description =
"One can either output a warped image, or the composite transform containing all input transforms, or a collapsed "
"affine or displacement field created from the input transforms. "
"The default output is the warped input image, resliced into the space of the reference image. Alternatively, one "
"can output the composite transform containing all input transforms, or a collapsed affine or displacement field "
"created from the input transforms. "
"If all input transforms are linear, they can be collapsed and (if boolean is set) inverted, then written to "
"an ITK transform file. "
"If the input transforms contain displacement fields, they can be collapsed into a single displacement field with "
"DisplacementField[collapsedDFFileName]. This replaces the usage '-o [collapsedDFFileName, 1]', which is "
"deprecated but still allowed for backwards compatibility. "
"To write a non-collapsed composite transform, use CompositeTransform[compositeTransform.h5]. The output file will "
"contain all the individual transforms.";
"To write a non-collapsed composite transform, use CompositeTransform[compositeTransform.h5].";

OptionType::Pointer option = OptionType::New();
option->SetLongName("output");
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