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Develop #262

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Develop #262

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a10646e
Update renderclient_schemas.py
RussTorres Feb 22, 2024
d8cff3f
asap: update names to asap for deployment
RussTorres Mar 21, 2024
2d4a7fa
requirements: explicit version for argschema and marshmallow based on…
RussTorres Mar 21, 2024
5a4b9fa
new module first attempt for applying multiple transforms
rathsidd Jul 31, 2024
30a2218
edited render connect
rathsidd Jul 31, 2024
2a0062b
new class name
rathsidd Jul 31, 2024
dbefc1f
new class name
rathsidd Jul 31, 2024
24c9117
removed spurious files
rathsidd Jul 31, 2024
9987de6
edited fit_multiple_solves.py and added corresponding schema to schem…
rathsidd Aug 20, 2024
5dfadb8
edited fit_multiple_solves.py and added corresponding schema to schem…
rathsidd Aug 20, 2024
d88cf37
edited fit_multiple_solves.py for outstack and output, edited schemas…
rathsidd Aug 20, 2024
aa7a597
gitignore: add test-reports
RussTorres Aug 21, 2024
79b4491
materialize: validation update for newer pillow
RussTorres Aug 21, 2024
3940e19
test: qc tests can skip failed imports -- allows tests to run (fail) …
RussTorres Aug 21, 2024
b81a155
pyproject: add pyproject w/ pixi support
RussTorres Aug 21, 2024
aa05178
Merge pull request #257 from AllenInstitute/test_fix
RussTorres Sep 5, 2024
29124c3
Merge pull request #255 from AllenInstitute/rc_schemas_validate_bugfix
RussTorres Sep 5, 2024
0ca0464
resolved comments and edits on fit_multiple_solves and schemas, pendi…
rathsidd Sep 9, 2024
49ec508
linted fit_multiple_solves.py and linted schemas.py
rathsidd Sep 23, 2024
6cce460
fit_multiple: add smoke test
RussTorres Sep 25, 2024
09db703
fit_multiple: fix output zs syntax and translation outputs
RussTorres Sep 25, 2024
b1b1a95
fit_multiple: change stack name handling
RussTorres Sep 25, 2024
7a846a5
fit_multiple: update to numpy.ptp for numpy>=2
RussTorres Sep 25, 2024
42b9f37
Merge pull request #256 from AllenInstitute/APPLY_MULTIPLE_SOLVES
RussTorres Sep 25, 2024
628f2a0
pyproject: remove jinja dep, pin pymongo, add jupyterlab feature
RussTorres Nov 4, 2024
8dcdce8
pyproject: remove commented reqs
RussTorres Nov 4, 2024
a09bc45
Fixed close_stack option in make_montage_scapes_stack module
rathsidd Nov 12, 2024
6da8768
Merge pull request #259 from AllenInstitute/FIX_MONTAGE_SCAPES
RussTorres Nov 23, 2024
a9c0e2f
Merge pull request #258 from AllenInstitute/pixi_pyproject_test
RussTorres Nov 23, 2024
d1ecf9b
montage_qc: fix montage integration tests for new bokeh versions
RussTorres Nov 24, 2024
ffe596b
montage_qc: better montage dimension setting
RussTorres Nov 26, 2024
86dbc69
montage_qc: faster pointmatch plot
RussTorres Nov 26, 2024
dca8060
montage_qc: method to plot residuals from tspecs and point residuals
RussTorres Nov 26, 2024
edcd9b6
montage_qc: functional restructure to plotting
RussTorres Nov 26, 2024
8b84ada
residual: faster mean tile residual
RussTorres Nov 26, 2024
5fd4407
montage_qc: improve detect_stitching_gaps -- speed and border polygons
RussTorres Nov 26, 2024
2804a44
residuals: add compute residuals for object interface
RussTorres Nov 26, 2024
d0a0cf0
montage_qc: new and object-based detect seams
RussTorres Nov 26, 2024
69414ad
montage_qc: update detect_disconnected for object interface
RussTorres Nov 26, 2024
a27fd63
montage_qc: add faster connected components via igraph
RussTorres Nov 26, 2024
8c1f0ca
montage_qc: fix save method and test
RussTorres Nov 27, 2024
5255f44
montage_qc: fix html writing
RussTorres Nov 27, 2024
b3892c9
montage_qc: tilespec inputs for deformation
RussTorres Nov 27, 2024
407a8ba
Merge pull request #261 from AllenInstitute/montage_qc_update
RussTorres Dec 3, 2024
2421eb2
montage_qc plots: configurable max residual and pointmatch
RussTorres Dec 4, 2024
7966d4b
Merge pull request #263 from AllenInstitute/montage_qc_config
RussTorres Dec 17, 2024
deaeff7
pointmatch: opencv support 16bpp & patent-free SIFT
RussTorres Dec 17, 2024
cdc9810
opencv: break apart find_matches to support clientside matching
RussTorres Dec 20, 2024
ed8fc1e
Merge pull request #264 from AllenInstitute/opencv_pm_update
RussTorres Dec 20, 2024
ffc82b4
Merge pull request #265 from AllenInstitute/deploy_updates
RussTorres Dec 20, 2024
3fffbce
lc: add python-only non-render lens correction derivation module
RussTorres Jan 13, 2025
67d1afe
Merge pull request #267 from AllenInstitute/nonrender_meshlc
RussTorres Jan 13, 2025
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6 changes: 5 additions & 1 deletion .gitignore
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Original file line number Diff line number Diff line change
Expand Up @@ -45,6 +45,7 @@ nosetests.xml
coverage.xml
*.cover
.hypothesis/
test-reports/

# Translations
*.mo
Expand Down Expand Up @@ -102,4 +103,7 @@ ENV/

.vscode

.DS_Store
.DS_Store

test-reports/

2 changes: 1 addition & 1 deletion asap/dataimport/make_montage_scapes_stack.py
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Original file line number Diff line number Diff line change
Expand Up @@ -237,7 +237,7 @@ def run(self):
# import tilespecs to render
self.render.run(renderapi.client.import_jsonfiles_parallel,
self.output_stack,
jsonfiles)
jsonfiles, close_stack=False)

if self.close_stack:
# set stack state to complete
Expand Down
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