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@AllenNeuralDynamics

Allen Institute for Neural Dynamics

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  1. aind-data-schema aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    Python 23 17

  2. aind-ephys-spikesort-kilosort25-full aind-ephys-spikesort-kilosort25-full Public

    CodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.

    Python 11 3

  3. aind-ephys-pipeline aind-ephys-pipeline Public

    AIND pipeline for processing extracellular electrophysiology data

    Nextflow 7 3

  4. segmentation-skeleton-metrics segmentation-skeleton-metrics Public

    A Python package for evaluating a predicted segmentation of neural arbors by computing skeleton-based metrics.

    Python 6

  5. parallax parallax Public

    GUI control software for the Modular Insertion System (MIS)

    Python 5 1

  6. TigerASI TigerASI Public

    a lightweight python interface for ASI brand Tiger Controllers

    Python 5 2

Repositories

Showing 10 of 323 repositories
  • aind-ephys-preprocessing Public

    CodeOcean capsule for ephys preprocessing

    AllenNeuralDynamics/aind-ephys-preprocessing’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Jan 24, 2025
  • AIND-ophys-mFISH-GLM Public

    GLM for ophys-mFISH datasets from AIND

    AllenNeuralDynamics/AIND-ophys-mFISH-GLM’s past year of commit activity
    Python 0 MIT 0 0 1 Updated Jan 24, 2025
  • aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    AllenNeuralDynamics/aind-data-schema’s past year of commit activity
    Python 23 MIT 17 49 7 Updated Jan 24, 2025
  • aind-data-schema-models Public

    Data models used in aind-data-schema

    AllenNeuralDynamics/aind-data-schema-models’s past year of commit activity
    Python 0 MIT 2 5 1 Updated Jan 24, 2025
  • aind-metadata-upgrader Public

    Upgrade JSON metadata from old versions of aind-data-schema

    AllenNeuralDynamics/aind-metadata-upgrader’s past year of commit activity
    Python 1 MIT 1 4 3 Updated Jan 24, 2025
  • ephys-sorting-manual-curation Public

    Repository for collecting manual curation data for spike-sorting

    AllenNeuralDynamics/ephys-sorting-manual-curation’s past year of commit activity
    Python 1 0 0 0 Updated Jan 24, 2025
  • AllenNeuralDynamics/aind-ophys-classifier’s past year of commit activity
    Python 0 MIT 0 2 0 Updated Jan 24, 2025
  • AllenNeuralDynamics/aind-multiplane-ophys-pipeline-without-splitting’s past year of commit activity
    Nextflow 0 MIT 0 1 0 Updated Jan 24, 2025
  • AllenNeuralDynamics/iGluSnFR-simulation’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Jan 24, 2025
  • AllenNeuralDynamics/lc_analysis_demonstration’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Jan 23, 2025