Python 3.12 support

.github/workflows/containers.yml

@@ -37,7 +37,7 @@ jobs:
       - name: Set up Python
         uses: actions/setup-python@v5
         with:
-          python-version: '3.11'
+          python-version: '3.12'
       - name: Use Node.js
         uses: actions/setup-node@v4
         with:
@@ -58,13 +58,13 @@ jobs:
           sbt stage createDistribution
         env:
           GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-          SCALAPY_PYTHON_LIBRARY: "python3.11"
+          SCALAPY_PYTHON_LIBRARY: "python3.12"
       - name: Export python requirements
         run: |
-          python3.11 -m pip install --upgrade pip
-          python3.11 -m pip install poetry
-          python3.11 -m poetry export -f requirements.txt --with=science --without-hashes --output target/chen-science-requirements.txt
-          python3.11 -m poetry export -f requirements.txt --with=database --without-hashes --output target/chen-database-requirements.txt
+          python3.12 -m pip install --upgrade pip
+          python3.12 -m pip install poetry
+          python3.12 -m poetry export -f requirements.txt --with=science --without-hashes --output target/chen-science-requirements.txt
+          python3.12 -m poetry export -f requirements.txt --with=database --without-hashes --output target/chen-database-requirements.txt
       - name: Upload chen to ghcr
         run: |
           cd target

.github/workflows/master.yml

@@ -25,7 +25,7 @@ jobs:
       - name: Set up Python
         uses: actions/setup-python@v5
         with:
-          python-version: '3.11'
+          python-version: '3.12'
       - name: Use Node.js
         uses: actions/setup-node@v4
         with:
@@ -50,11 +50,11 @@ jobs:
         run: |
           bash ./platform/frontends/php2atom/install.sh
           npm install -g @appthreat/atom
-          python3.11 -m pip install --upgrade pip
-          python3.11 -m pip install poetry
-          python3.11 -m poetry config virtualenvs.create false
-          python3.11 -m poetry install --no-cache
-          python3.11 -m poetry run flake8 chenpy --count --select=E9,F63,F7,F82 --show-source --statistics
+          python3.12 -m pip install --upgrade pip
+          python3.12 -m pip install poetry
+          python3.12 -m poetry config virtualenvs.create false
+          python3.12 -m poetry install --no-cache
+          python3.12 -m poetry run flake8 chenpy --count --select=E9,F63,F7,F82 --show-source --statistics
       - uses: actions/cache@v4
         with:
           path: |
@@ -65,7 +65,7 @@ jobs:
         env:
           GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
           JAVA_TOOL_OPTIONS: "-Dfile.encoding=UTF-8 -Djna.library.path=${{ env.Python3_ROOT_DIR }}"
-          SCALAPY_PYTHON_LIBRARY: "python3.11"
+          SCALAPY_PYTHON_LIBRARY: "python3.12"
         if: runner.os != 'Windows'
       - name: Compile and run tests
         run: sbt scalafmtCheck +test

.github/workflows/pr.yml

@@ -1,7 +1,7 @@
 name: pr
 on: pull_request
 jobs:
-  test:
+  pr-tests:
     runs-on: ${{ matrix.os }}
     strategy:
       matrix:
@@ -26,7 +26,7 @@ jobs:
       - name: Set up Python
         uses: actions/setup-python@v5
         with:
-          python-version: '3.11'
+          python-version: '3.12'
       - name: Use Node.js
         uses: actions/setup-node@v4
         with:
@@ -69,7 +69,7 @@ jobs:
         env:
           GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
           JAVA_TOOL_OPTIONS: "-Dfile.encoding=UTF-8 -Djna.library.path=${{ env.Python3_ROOT_DIR }}"
-          SCALAPY_PYTHON_LIBRARY: "python3.11"
+          SCALAPY_PYTHON_LIBRARY: "python3.12"
         if: runner.os != 'Windows'
       - name: Compile and run tests
         run: |
@@ -78,5 +78,5 @@ jobs:
         env:
           GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
           JAVA_TOOL_OPTIONS: "-Dfile.encoding=UTF-8 -Djna.library.path=${{ env.Python3_ROOT_DIR }}"
-          SCALAPY_PYTHON_LIBRARY: "python311"
+          SCALAPY_PYTHON_LIBRARY: "python312"
         if: runner.os == 'Windows'

.github/workflows/release.yml

@@ -29,7 +29,7 @@ jobs:
       - name: Set up Python
         uses: actions/setup-python@v5
         with:
-          python-version: '3.11'
+          python-version: '3.12'
       - name: Use Node.js
         uses: actions/setup-node@v4
         with:
@@ -50,7 +50,7 @@ jobs:
           sbt createDistribution publish
         env:
           GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-          SCALAPY_PYTHON_LIBRARY: "python3.11"
+          SCALAPY_PYTHON_LIBRARY: "python3.12"
       - name: Install and test
         run: |
           npm install -g @appthreat/atom

README.md

@@ -81,7 +81,7 @@ Once the download finishes, the command will display the download location along
 [21:53:36] INFO     To run chennai console, add the following environment variables to your .zshrc or .bashrc:
 export JAVA_OPTS="-Xmx16G"
 export JAVA_TOOL_OPTIONS="-Dfile.encoding=UTF-8 -Djna.library.path=<lib dir>"
-export SCALAPY_PYTHON_LIBRARY=python3.11
+export SCALAPY_PYTHON_LIBRARY=python3.12
 export CHEN_HOME=/home/user/.local/share/chen
 export PATH=$PATH:/home/user/.local/share/chen/platform:/home/user/.local/share/chen/platform/bin:
 ```
@@ -182,7 +182,7 @@ chennai> help
 
 This error is mostly due to missing python .so (linux), .dll (windows) or .dylib (mac) file. Ensure the environment variables below are set correctly.
 
-- SCALAPY_PYTHON_LIBRARY - Use values such as python3.10, python3.11 based on the version installed. On Windows, there are no dots. python311
+- SCALAPY_PYTHON_LIBRARY - Use values such as python3.10, python3.11 based on the version installed. On Windows, there are no dots. python312
 - JAVA_TOOL_OPTIONS - jna.library.path must be set to the python lib directory
 - SCALAPY_PYTHON_PROGRAMNAME - Path to Python executable in case of virtual environments (Usually not required)
 

build.sbt

@@ -1,6 +1,6 @@
 name                     := "chen"
 ThisBuild / organization := "io.appthreat"
-ThisBuild / version      := "2.0.11"
+ThisBuild / version      := "2.1.0"
 ThisBuild / scalaVersion := "3.4.1"
 
 val cpgVersion = "1.0.0"

chenpy/cli.py

@@ -178,11 +178,11 @@ def install_py_modules(pack="database"):
             "About to install the science pack using conda. A new environment called 'chenpy-local' will be created."
         )
         with Progress(transient=True) as progress:
-            conda_install_script = """conda create --name chenpy-local python=3.11 -y
+            conda_install_script = """conda create --name chenpy-local python=3.12 -y
 conda install -n chenpy-local conda-libmamba-solver -y
 conda install -n chenpy-local -c conda-forge networkx --solver=libmamba -y
 conda install -n chenpy-local -c pytorch pytorch torchtext cpuonly --solver=libmamba -y
-pip install pyg_lib -f https://data.pyg.org/whl/torch-2.1.0+cpu.html
+pip install pyg_lib -f https://data.pyg.org/whl/torch-2.3.0+cpu.html
 conda install -n chenpy-local -c conda-forge scipy numpy packageurl-python nbconvert jupyter_core jupyter_client notebook --solver=libmamba -y
 conda install -n chenpy-local -c conda-forge oras-py==0.1.26 httpx websockets orjson rich appdirs psutil gitpython --solver=libmamba -y"""
             for line in conda_install_script.split("\n"):

ci/Dockerfile

@@ -4,7 +4,7 @@ LABEL maintainer="appthreat" \
       org.opencontainers.image.authors="Team AppThreat <cloud@appthreat.com>" \
       org.opencontainers.image.source="https://github.com/appthreat/chen" \
       org.opencontainers.image.url="https://github.com/appthreat/chen" \
-      org.opencontainers.image.version="2.0.x" \
+      org.opencontainers.image.version="2.1.x" \
       org.opencontainers.image.vendor="appthreat" \
       org.opencontainers.image.licenses="Apache-2.0" \
       org.opencontainers.image.title="chen" \
@@ -27,7 +27,7 @@ ENV JAVA_VERSION=$JAVA_VERSION \
     PYTHONIOENCODING="utf-8" \
     JAVA_OPTS="-XX:+UseG1GC -XX:+ExplicitGCInvokesConcurrent -XX:+ParallelRefProcEnabled -XX:+UseStringDeduplication -XX:+UnlockExperimentalVMOptions -XX:G1NewSizePercent=20 -XX:+UnlockDiagnosticVMOptions -XX:G1SummarizeRSetStatsPeriod=1" \
     CHEN_DATAFLOW_TRACKED_WIDTH=128 \
-    SCALAPY_PYTHON_LIBRARY=python3.11 \
+    SCALAPY_PYTHON_LIBRARY=python3.12 \
     ANDROID_HOME=/opt/android-sdk-linux \
     CHEN_INSTALL_DIR=/opt/workspace \
     PHP_PARSER_BIN=/opt/vendor/bin/php-parse \

ci/conda-install.sh

@@ -6,6 +6,6 @@ pip install -U pip setuptools poetry
 conda install -c conda-forge networkx -y
 conda install -c conda-forge scipy numpy -y
 conda install -c pytorch pytorch torchtext cpuonly -y
-pip install pyg_lib -f https://data.pyg.org/whl/torch-2.1.0+cpu.html
+pip install pyg_lib -f https://data.pyg.org/whl/torch-2.3.0+cpu.html
 conda install -c conda-forge packageurl-python nbconvert jupyter_core jupyter_client notebook -y
 conda install -c conda-forge oras-py httpx websockets orjson rich appdirs psutil gitpython -y

codemeta.json

@@ -7,7 +7,7 @@
   "downloadUrl": "https://github.com/AppThreat/chen",
   "issueTracker": "https://github.com/AppThreat/chen/issues",
   "name": "chen",
-  "version": "2.0.11",
+  "version": "2.1.0",
   "description": "Code Hierarchy Exploration Net (chen) is an advanced exploration toolkit for your application source code and its dependency hierarchy.",
   "applicationCategory": "code-analysis",
   "keywords": [

docker-compose.yml

@@ -1,4 +1,3 @@
-version: "3.9"
 services:
   chennai:
     image: ghcr.io/appthreat/chen
@@ -29,7 +28,7 @@ services:
           target: /opt/chenpy
         - action: sync
           path: ./chenpy
-          target: /opt/miniconda3/lib/python3.11/site-packages/chenpy
+          target: /opt/miniconda3/lib/python3.12/site-packages/chenpy
     volumes:
       - ./notebooks:/opt/notebooks
       - /tmp:/tmp

meta.yaml

@@ -1,4 +1,4 @@
-{% set version = "2.0.11" %}
+{% set version = "2.1.0" %}
 
 package:
   name: chen