🙈 forgot abundance

BecksLab · Jun 19, 2024 · 6edc5c9 · 6edc5c9
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diff --git a/docs/_tex/images/mechanism.png b/docs/_tex/images/mechanism.png
diff --git a/docs/_tex/index.tex b/docs/_tex/index.tex
@@ -444,7 +444,7 @@ \subsection{Putting the parts together; what does it
 research programmes (or even practical needs) that have been driving the
 construction of them.
 
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+\begin{tcolorbox}[enhanced jigsaw, arc=.35mm, opacityback=0, leftrule=.75mm, title=\textcolor{quarto-callout-note-color}{\faInfo}\hspace{0.5em}{Box 1 - Moving between the feasibility and reality of interactions}, colframe=quarto-callout-note-color-frame, toprule=.15mm, breakable, coltitle=black, bottomtitle=1mm, opacitybacktitle=0.6, left=2mm, colback=white, toptitle=1mm, titlerule=0mm, colbacktitle=quarto-callout-note-color!10!white, bottomrule=.15mm, rightrule=.15mm]
 
 Before thinking about the ways in which we can predict networks it is
 perhaps meaningful to take a step back and think about the different
@@ -833,7 +833,7 @@ \subsection{Model families}\label{model-families}
 
 \end{figure}%
 
-\begin{tcolorbox}[enhanced jigsaw, bottomtitle=1mm, coltitle=black, opacityback=0, arc=.35mm, colback=white, bottomrule=.15mm, toprule=.15mm, colframe=quarto-callout-note-color-frame, colbacktitle=quarto-callout-note-color!10!white, leftrule=.75mm, rightrule=.15mm, toptitle=1mm, titlerule=0mm, title=\textcolor{quarto-callout-note-color}{\faInfo}\hspace{0.5em}{Box 2 - Assessing model outputs}, left=2mm, breakable, opacitybacktitle=0.6]
+\begin{tcolorbox}[enhanced jigsaw, arc=.35mm, opacityback=0, leftrule=.75mm, title=\textcolor{quarto-callout-note-color}{\faInfo}\hspace{0.5em}{Box 2 - Assessing model outputs}, colframe=quarto-callout-note-color-frame, toprule=.15mm, breakable, coltitle=black, bottomtitle=1mm, opacitybacktitle=0.6, left=2mm, colback=white, toptitle=1mm, titlerule=0mm, colbacktitle=quarto-callout-note-color!10!white, bottomrule=.15mm, rightrule=.15mm]
 
 Although understanding the underlying philosophy of the different model
 families is beneficial it is also important to understand in what

diff --git a/docs/images/mechanism.png b/docs/images/mechanism.png
diff --git a/docs/index.docx b/docs/index.docx
diff --git a/docs/index.html b/docs/index.html
@@ -1344,7 +1344,7 @@ <h2 class="unnumbered anchored" data-anchor-id="references">References</h2>
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diff --git a/docs/index.pdf b/docs/index.pdf
diff --git a/docs/notebooks/model_qualitative-preview.html b/docs/notebooks/model_qualitative-preview.html
@@ -1688,7 +1688,7 @@ <h2 class="anchored" data-anchor-id="visualisation">Visualisation</h2>
 <div id="fig-dendro" class="quarto-figure quarto-figure-center quarto-float anchored">
 <figure class="quarto-float quarto-float-fig figure">
 <div aria-describedby="fig-dendro-caption-0ceaefa1-69ba-4598-a22c-09a6ac19f8ca">
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+<a href="../images/dendo.png" class="lightbox" data-glightbox="description: .lightbox-desc-1" data-gallery="quarto-lightbox-gallery-1"><img src="../images/dendo.png" class="img-fluid figure-img"></a>
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 <figcaption class="quarto-float-caption-bottom quarto-float-caption quarto-float-fig" id="fig-dendro-caption-0ceaefa1-69ba-4598-a22c-09a6ac19f8ca">
 Dendrogram of the trait table using a hierarchical clustering model, This is based off of the traits table in SuppMat 2)
@@ -2092,7 +2092,7 @@ <h2 class="unnumbered anchored" data-anchor-id="references">References</h2>
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diff --git a/docs/notebooks/model_qualitative.out.ipynb b/docs/notebooks/model_qualitative.out.ipynb
diff --git a/docs/notebooks/model_quantitative-preview.html b/docs/notebooks/model_quantitative-preview.html
@@ -501,7 +501,7 @@ <h2 class="anchored" data-anchor-id="visualising-results">Visualising results</h
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+<a href="../images/boxplot.png" class="lightbox" data-glightbox="description: .lightbox-desc-1" data-gallery="quarto-lightbox-gallery-1"><img src="../images/boxplot.png" class="img-fluid figure-img"></a>
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 <figcaption class="quarto-float-caption-bottom quarto-float-caption quarto-float-fig" id="fig-boxplot-caption-0ceaefa1-69ba-4598-a22c-09a6ac19f8ca">
 Boxplot
@@ -512,7 +512,7 @@ <h2 class="anchored" data-anchor-id="visualising-results">Visualising results</h
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 Differences
@@ -949,7 +949,7 @@ <h2 class="unnumbered anchored" data-anchor-id="references">References</h2>
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diff --git a/docs/notebooks/model_quantitative.out.ipynb b/docs/notebooks/model_quantitative.out.ipynb
diff --git a/images/mechanism.png b/images/mechanism.png