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BecksLab · Nov 13, 2024 · cf0f04e · cf0f04e
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diff --git a/.nojekyll b/.nojekyll
@@ -1 +1 @@
-2d08e242
+4c5137fd
diff --git a/_tex/index.tex b/_tex/index.tex
@@ -654,8 +654,8 @@ \section{Network construction is
 context of trying to understand the feeding dynamics of a seasonal
 community.
 
-\begin{tcolorbox}[enhanced jigsaw, breakable, opacitybacktitle=0.6, colbacktitle=quarto-callout-note-color!10!white, coltitle=black, toprule=.15mm, rightrule=.15mm, opacityback=0, bottomtitle=1mm, bottomrule=.15mm, colframe=quarto-callout-note-color-frame, colback=white, toptitle=1mm, titlerule=0mm, left=2mm, title=\textcolor{quarto-callout-note-color}{\faInfo}\hspace{0.5em}{Box 1 - Why we need to aggregate networks at different scales: A
-hypothetical case study}, arc=.35mm, leftrule=.75mm]
+\begin{tcolorbox}[enhanced jigsaw, colback=white, bottomtitle=1mm, title=\textcolor{quarto-callout-note-color}{\faInfo}\hspace{0.5em}{Box 1 - Why we need to aggregate networks at different scales: A
+hypothetical case study}, colbacktitle=quarto-callout-note-color!10!white, coltitle=black, rightrule=.15mm, left=2mm, breakable, colframe=quarto-callout-note-color-frame, titlerule=0mm, arc=.35mm, opacityback=0, toprule=.15mm, toptitle=1mm, bottomrule=.15mm, leftrule=.75mm, opacitybacktitle=0.6]
 
 Although it might seem most prudent to be predicting, constructing, and
 defining networks that are the closest representation of reality there
@@ -887,14 +887,14 @@ \subsection{Making use of the different network
 
 \caption{\label{fig-future}Here we highlight some of the outstanding
 questions in both network as well as general ecology, as well as some of
-the outstanding methodological challenges we face.}
+the outstanding methodological challenges (shown in orange) we face.}
 
 \end{figure}%
 
 \begin{longtable}[]{@{}
-  >{\raggedright\arraybackslash}p{(\linewidth - 4\tabcolsep) * \real{0.2466}}
-  >{\raggedright\arraybackslash}p{(\linewidth - 4\tabcolsep) * \real{0.3562}}
-  >{\raggedright\arraybackslash}p{(\linewidth - 4\tabcolsep) * \real{0.3973}}@{}}
+  >{\raggedright\arraybackslash}p{(\linewidth - 4\tabcolsep) * \real{0.2500}}
+  >{\raggedright\arraybackslash}p{(\linewidth - 4\tabcolsep) * \real{0.3611}}
+  >{\raggedright\arraybackslash}p{(\linewidth - 4\tabcolsep) * \real{0.3889}}@{}}
 \caption{This table represents an alternative approach to try and think
 about mapping questions to the different network
 representations.}\tabularnewline

diff --git a/index.docx b/index.docx
diff --git a/index.html b/index.html
@@ -550,19 +550,19 @@ <h2 data-number="4.3" class="anchored" data-anchor-id="making-use-of-the-differe
 <div id="fig-future" class="quarto-float quarto-figure quarto-figure-center anchored">
 <figure class="quarto-float quarto-float-fig figure">
 <div aria-describedby="fig-future-caption-0ceaefa1-69ba-4598-a22c-09a6ac19f8ca">
-<a href="images/NetworkFuture.png" class="lightbox" data-gallery="quarto-lightbox-gallery-3" title="Figure&nbsp;3: Here we highlight some of the outstanding questions in both network as well as general ecology, as well as some of the outstanding methodological challenges we face."><img src="images/NetworkFuture.png" class="img-fluid figure-img"></a>
+<a href="images/NetworkFuture.png" class="lightbox" data-gallery="quarto-lightbox-gallery-3" title="Figure&nbsp;3: Here we highlight some of the outstanding questions in both network as well as general ecology, as well as some of the outstanding methodological challenges (shown in orange) we face."><img src="images/NetworkFuture.png" class="img-fluid figure-img"></a>
 </div>
 <figcaption class="quarto-float-caption-bottom quarto-float-caption quarto-float-fig" id="fig-future-caption-0ceaefa1-69ba-4598-a22c-09a6ac19f8ca">
-Figure&nbsp;3: Here we highlight some of the outstanding questions in both network as well as general ecology, as well as some of the outstanding methodological challenges we face.
+Figure&nbsp;3: Here we highlight some of the outstanding questions in both network as well as general ecology, as well as some of the outstanding methodological challenges (shown in orange) we face.
 </figcaption>
 </figure>
 </div>
 <table class="caption-top table">
 <caption>This table represents an alternative approach to try and think about mapping questions to the different network representations.</caption>
 <colgroup>
-<col style="width: 24%">
-<col style="width: 35%">
-<col style="width: 39%">
+<col style="width: 25%">
+<col style="width: 36%">
+<col style="width: 38%">
 </colgroup>
 <thead>
 <tr class="header">

diff --git a/index.pdf b/index.pdf
diff --git a/notebooks/model_qualitative.embed.ipynb b/notebooks/model_qualitative.embed.ipynb
diff --git a/notebooks/model_qualitative.out.ipynb b/notebooks/model_qualitative.out.ipynb
diff --git a/notebooks/model_quantitative.embed.ipynb b/notebooks/model_quantitative.embed.ipynb
diff --git a/notebooks/model_quantitative.out.ipynb b/notebooks/model_quantitative.out.ipynb