Skip to content

Commit

Permalink
Built site for gh-pages
Browse files Browse the repository at this point in the history
  • Loading branch information
Quarto GHA Workflow Runner committed Jan 10, 2025
1 parent 7850664 commit 1ea67d0
Show file tree
Hide file tree
Showing 22 changed files with 350 additions and 18,273 deletions.
2 changes: 1 addition & 1 deletion .nojekyll
Original file line number Diff line number Diff line change
@@ -1 +1 @@
c23c4139
9415af33
Binary file added assets/logo.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
10,224 changes: 93 additions & 10,131 deletions index.html

Large diffs are not rendered by default.

155 changes: 81 additions & 74 deletions intro.html
Original file line number Diff line number Diff line change
Expand Up @@ -2,12 +2,12 @@
<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en"><head>

<meta charset="utf-8">
<meta name="generator" content="quarto-1.7.7">
<meta name="generator" content="quarto-1.7.8">

<meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes">


<title>intro – Using Github for Scientific Collaboration</title>
<title>1&nbsp; Introduction – Using Github for Scientific Collaboration</title>
<style>
code{white-space: pre-wrap;}
span.smallcaps{font-variant: small-caps;}
Expand All @@ -20,7 +20,27 @@
margin: 0 0.8em 0.2em -1em; /* quarto-specific, see https://github.com/quarto-dev/quarto-cli/issues/4556 */
vertical-align: middle;
}
</style>
/* CSS for citations */
div.csl-bib-body { }
div.csl-entry {
clear: both;
margin-bottom: 0em;
}
.hanging-indent div.csl-entry {
margin-left:2em;
text-indent:-2em;
}
div.csl-left-margin {
min-width:2em;
float:left;
}
div.csl-right-inline {
margin-left:2em;
padding-left:1em;
}
div.csl-indent {
margin-left: 2em;
}</style>


<script src="site_libs/quarto-nav/quarto-nav.js"></script>
Expand All @@ -32,17 +52,17 @@
<meta name="quarto:offset" content="./">
<link href="./summary.html" rel="next">
<link href="./index.html" rel="prev">
<script src="site_libs/quarto-html/quarto.js"></script>
<link href="./assets/logo.png" rel="icon" type="image/png">
<script src="site_libs/quarto-html/quarto.js" type="module"></script>
<script src="site_libs/quarto-html/tabsets/tabsets.js" type="module"></script>
<script src="site_libs/quarto-html/popper.min.js"></script>
<script src="site_libs/quarto-html/tippy.umd.min.js"></script>
<script src="site_libs/quarto-html/anchor.min.js"></script>
<link href="site_libs/quarto-html/tippy.css" rel="stylesheet">
<link href="site_libs/quarto-html/quarto-syntax-highlighting-fe43d0015be6fd5bd60fe62033074fe8.css" rel="stylesheet" id="quarto-text-highlighting-styles">
<link href="site_libs/quarto-html/quarto-syntax-highlighting-fae04a4dda57acfb7da1e58796bfa73f.css" rel="stylesheet" id="quarto-text-highlighting-styles">
<script src="site_libs/bootstrap/bootstrap.min.js"></script>
<link href="site_libs/bootstrap/bootstrap-icons.css" rel="stylesheet">
<link href="site_libs/bootstrap/bootstrap-01a7ee9fe8a7a25a03b0763bbbf88099.min.css" rel="stylesheet" append-hash="true" id="quarto-bootstrap" data-mode="light">
<link href="site_libs/quarto-contrib/fontawesome6-0.1.0/all.css" rel="stylesheet">
<link href="site_libs/quarto-contrib/fontawesome6-0.1.0/latex-fontsize.css" rel="stylesheet">
<link href="site_libs/bootstrap/bootstrap-13c89cff87a5b148795380d8c57963a7.min.css" rel="stylesheet" append-hash="true" id="quarto-bootstrap" data-mode="light">
<script id="quarto-search-options" type="application/json">{
"location": "sidebar",
"copy-button": false,
Expand Down Expand Up @@ -74,7 +94,7 @@

</head>

<body class="nav-sidebar docked">
<body class="nav-sidebar floating">

<div id="quarto-search-results"></div>
<header id="quarto-header" class="headroom fixed-top">
Expand All @@ -83,95 +103,101 @@
<button type="button" class="quarto-btn-toggle btn" data-bs-toggle="collapse" role="button" data-bs-target=".quarto-sidebar-collapse-item" aria-controls="quarto-sidebar" aria-expanded="false" aria-label="Toggle sidebar navigation" onclick="if (window.quartoToggleHeadroom) { window.quartoToggleHeadroom(); }">
<i class="bi bi-layout-text-sidebar-reverse"></i>
</button>
<nav class="quarto-page-breadcrumbs" aria-label="breadcrumb"><ol class="breadcrumb"><li class="breadcrumb-item"><a href="./index.html">What is Github</a></li><li class="breadcrumb-item"><a href="./intro.html">Introduction</a></li></ol></nav>
<nav class="quarto-page-breadcrumbs" aria-label="breadcrumb"><ol class="breadcrumb"><li class="breadcrumb-item"><a href="./intro.html"><span class="chapter-number">1</span>&nbsp; <span class="chapter-title">Introduction</span></a></li></ol></nav>
<a class="flex-grow-1" role="navigation" data-bs-toggle="collapse" data-bs-target=".quarto-sidebar-collapse-item" aria-controls="quarto-sidebar" aria-expanded="false" aria-label="Toggle sidebar navigation" onclick="if (window.quartoToggleHeadroom) { window.quartoToggleHeadroom(); }">
</a>
<button type="button" class="btn quarto-search-button" aria-label="Search" onclick="window.quartoOpenSearch();">
<i class="bi bi-search"></i>
</button>
</div>
</nav>
</header>
<!-- content -->
<div id="quarto-content" class="quarto-container page-columns page-rows-contents page-layout-article">
<!-- sidebar -->
<nav id="quarto-sidebar" class="sidebar collapse collapse-horizontal quarto-sidebar-collapse-item sidebar-navigation docked overflow-auto">
<div class="pt-lg-2 mt-2 text-left sidebar-header">
<nav id="quarto-sidebar" class="sidebar collapse collapse-horizontal quarto-sidebar-collapse-item sidebar-navigation floating overflow-auto">
<div class="pt-lg-2 mt-2 text-left sidebar-header sidebar-header-stacked">
<a href="./index.html" class="sidebar-logo-link">
<img src="./assets/logo.png" alt="" class="sidebar-logo py-0 d-lg-inline d-none">
</a>
<div class="sidebar-title mb-0 py-0">
<a href="./">Using Github for Scientific Collaboration</a>
<div class="sidebar-tools-main">
<a href="https://github.com/BecksLab/tutorial_github" title="Source Code" class="quarto-navigation-tool px-1" aria-label="Source Code"><i class="bi bi-github"></i></a>
</div>
</div>
</div>
<div class="mt-2 flex-shrink-0 align-items-center">
<div class="sidebar-search">
<div id="quarto-search" class="" title="Search"></div>
</div>
</div>
<div class="sidebar-menu-container">
<ul class="list-unstyled mt-1">
<li class="sidebar-item sidebar-item-section">
<div class="sidebar-item-container">
<a class="sidebar-item-text sidebar-link text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-1" role="navigation" aria-expanded="true">
<span class="menu-text">What is Github</span></a>
<a class="sidebar-item-toggle text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-1" role="navigation" aria-expanded="true" aria-label="Toggle section">
<i class="bi bi-chevron-right ms-2"></i>
</a>
</div>
<ul id="quarto-sidebar-section-1" class="collapse list-unstyled sidebar-section depth1 show">
<li class="sidebar-item">
<li class="sidebar-item">
<div class="sidebar-item-container">
<a href="./index.html" class="sidebar-item-text sidebar-link">
<span class="menu-text">Github: a primer</span></a>
</div>
</li>
<li class="sidebar-item">
<li class="sidebar-item">
<div class="sidebar-item-container">
<a href="./intro.html" class="sidebar-item-text sidebar-link active">
<span class="menu-text">Introduction</span></a>
<span class="menu-text"><span class="chapter-number">1</span>&nbsp; <span class="chapter-title">Introduction</span></span></a>
</div>
</li>
</ul>
</li>
<li class="sidebar-item sidebar-item-section">
<div class="sidebar-item-container">
<a class="sidebar-item-text sidebar-link text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-2" role="navigation" aria-expanded="true">
<span class="menu-text">Setting Up Github</span></a>
<a class="sidebar-item-toggle text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-2" role="navigation" aria-expanded="true" aria-label="Toggle section">
<i class="bi bi-chevron-right ms-2"></i>
</a>
</div>
<ul id="quarto-sidebar-section-2" class="collapse list-unstyled sidebar-section depth1 show">
<li class="sidebar-item">
<li class="sidebar-item">
<div class="sidebar-item-container">
<a href="./summary.html" class="sidebar-item-text sidebar-link">
<span class="menu-text">Summary</span></a>
<span class="menu-text"><span class="chapter-number">2</span>&nbsp; <span class="chapter-title">Summary</span></span></a>
</div>
</li>
</ul>
</li>
<li class="sidebar-item sidebar-item-section">
<span class="sidebar-item-text sidebar-link text-start">
<span class="menu-text">Using Github</span></span>
</li>
<li class="sidebar-item sidebar-item-section">
<span class="sidebar-item-text sidebar-link text-start">
<span class="menu-text">Collaborating with Github</span></span>
</li>
</ul>
</div>
</nav>
<div id="quarto-sidebar-glass" class="quarto-sidebar-collapse-item" data-bs-toggle="collapse" data-bs-target=".quarto-sidebar-collapse-item"></div>
<!-- margin-sidebar -->
<div id="quarto-margin-sidebar" class="sidebar margin-sidebar">
<nav id="TOC" role="doc-toc" class="toc-active">
<h2 id="toc-title">On this page</h2>
<h2 id="toc-title">Table of contents</h2>

<ul>
<li><a href="#introduction" id="toc-introduction" class="nav-link active" data-scroll-target="#introduction">Introduction</a></li>
<li><a href="#references" id="toc-references" class="nav-link active" data-scroll-target="#references">References</a></li>
</ul>
</nav>
</div>
<!-- main -->
<main class="content" id="quarto-document-content"><header id="title-block-header" class="quarto-title-block"><nav class="quarto-page-breadcrumbs quarto-title-breadcrumbs d-none d-lg-block" aria-label="breadcrumb"><ol class="breadcrumb"><li class="breadcrumb-item"><a href="./index.html">What is Github</a></li><li class="breadcrumb-item"><a href="./intro.html">Introduction</a></li></ol></nav></header>
<main class="content" id="quarto-document-content">

<header id="title-block-header" class="quarto-title-block default">
<div class="quarto-title">
<h1 class="title"><span class="chapter-number">1</span>&nbsp; <span class="chapter-title">Introduction</span></h1>
</div>



<div class="quarto-title-meta">




</div>



</header>


<section id="introduction" class="level1">
<h1>Introduction</h1>
<p>This is a book created from markdown and executable code.</p>
<p>See <span class="citation" data-cites="knuth84">@knuth84</span> for additional discussion of literate programming.</p>
<p>See <span class="citation" data-cites="knuth84">Knuth (<a href="intro.html#ref-knuth84" role="doc-biblioref">1984</a>)</span> for additional discussion of literate programming.</p>
<section id="references" class="level2 unnumbered">
<h2 class="unnumbered anchored" data-anchor-id="references">References</h2>
<div id="refs" class="references csl-bib-body hanging-indent" data-entry-spacing="0" role="list">
<div id="ref-knuth84" class="csl-entry" role="listitem">
Knuth, Donald E. 1984. <span>“Literate Programming.”</span> <em>Comput.
J.</em> 27 (2): 97–111. <a href="https://doi.org/10.1093/comjnl/27.2.97">https://doi.org/10.1093/comjnl/27.2.97</a>.
</div>
</div>


</section>
Expand Down Expand Up @@ -267,7 +293,7 @@ <h1>Introduction</h1>
}
var localhostRegex = new RegExp(/^(?:http|https):\/\/localhost\:?[0-9]*\//);
var mailtoRegex = new RegExp(/^mailto:/);
var filterRegex = new RegExp("https:\/\/BecksLab\.github\.io\/tutorial_github\/");
var filterRegex = new RegExp('/' + window.location.host + '/');
var isInternal = (href) => {
return filterRegex.test(href) || localhostRegex.test(href) || mailtoRegex.test(href);
}
Expand Down Expand Up @@ -602,30 +628,11 @@ <h1>Introduction</h1>
</div>
<div class="nav-page nav-page-next">
<a href="./summary.html" class="pagination-link" aria-label="Summary">
<span class="nav-page-text">Summary</span> <i class="bi bi-arrow-right-short"></i>
<span class="nav-page-text"><span class="chapter-number">2</span>&nbsp; <span class="chapter-title">Summary</span></span> <i class="bi bi-arrow-right-short"></i>
</a>
</div>
</nav>
</div> <!-- /content -->
<footer class="footer">
<div class="nav-footer">
<div class="nav-footer-left">
&nbsp;
</div>
<div class="nav-footer-center">
&nbsp;
</div>
<div class="nav-footer-right">
<ul class="footer-items list-unstyled">
<li class="nav-item">
<a class="nav-link" href="https://github.com/BecksLab/JuliaTutorials_BecksLab">
<p><i class="fa-solid fa-code" aria-label="code"></i> Source code</p>
</a>
</li>
</ul>
</div>
</div>
</footer>



Expand Down
1 change: 0 additions & 1 deletion robots.txt

This file was deleted.

39 changes: 23 additions & 16 deletions search.json
Original file line number Diff line number Diff line change
@@ -1,35 +1,42 @@
[
{
"objectID": "index.html",
"href": "index.html",
"title": "Using Github for Scientific Collaboration",
"section": "",
"text": "Github: a primer\nThis is a Quarto book.\nTo learn more about Quarto books visit https://quarto.org/docs/books.",
"crumbs": [
"Github: a primer"
]
},
{
"objectID": "intro.html",
"href": "intro.html",
"title": "Introduction",
"title": "Introduction",
"section": "",
"text": "Introduction\nThis is a book created from markdown and executable code.\nSee @knuth84 for additional discussion of literate programming.",
"text": "References\nThis is a book created from markdown and executable code.\nSee Knuth (1984) for additional discussion of literate programming.",
"crumbs": [
"What is Github",
"Introduction"
"<span class='chapter-number'>1</span>  <span class='chapter-title'>Introduction</span>"
]
},
{
"objectID": "summary.html",
"href": "summary.html",
"title": "Summary",
"objectID": "intro.html#references",
"href": "intro.html#references",
"title": "1  Introduction",
"section": "",
"text": "Summary\nIn summary, this book has no content whatsoever.",
"text": "Knuth, Donald E. 1984. “Literate Programming.” Comput.\nJ. 27 (2): 97–111. https://doi.org/10.1093/comjnl/27.2.97.",
"crumbs": [
"Setting Up Github",
"Summary"
"<span class='chapter-number'>1</span>  <span class='chapter-title'>Introduction</span>"
]
},
{
"objectID": "index.html",
"href": "index.html",
"title": "Github: a primer",
"objectID": "summary.html",
"href": "summary.html",
"title": "2  Summary",
"section": "",
"text": "This is a Quarto book.\nTo learn more about Quarto books visit https://quarto.org/docs/books.",
"text": "In summary, this book has no content whatsoever.",
"crumbs": [
"What is Github",
"Github: a primer"
"<span class='chapter-number'>2</span>  <span class='chapter-title'>Summary</span>"
]
}
]

Large diffs are not rendered by default.

Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Loading

0 comments on commit 1ea67d0

Please sign in to comment.