feat: script to render plot without sending email

CCBR · Jan 29, 2024 · ccd1450 · ccd1450
1 parent 1f2df5f
commit ccd1450
Showing 1 changed file with 10 additions and 0 deletions.
diff --git a/bin/render.sh b/bin/render.sh
@@ -0,0 +1,10 @@
+#!/usr/bin/env bash
+# to be executed from /data/CCBR_Pipeliner/Tools/spacesavers2/report
+# Usage: bash bin/render_report_biowulf.sh
+module load singularity
+SINGULARITY_CACHEDIR=/data/CCBR_Pipeliner/SIFS
+
+echo "cd /mnt && \
+    Rscript bin/render.R \
+    " |\
+    singularity exec -C -B $PWD:/mnt,/data/CCBR_Pipeliner/userdata/spacesavers2/:/mnt/data docker://nciccbr/spacesavers2:0.1.1 bash