updated inputs.json with s3 inputs

CCRGeneticsBranch · Oct 28, 2022 · 5eaa082 · 5eaa082
1 parent 342b772
commit 5eaa082
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Showing 2 changed files with 6 additions and 1 deletion.
diff --git a/mvp/MANIFEST.json b/mvp/MANIFEST.json
@@ -5,3 +5,4 @@
   ],
   "engineOptions": "-resume -profile test -r main"
 }
+
diff --git a/mvp/inputs.json b/mvp/inputs.json
@@ -1,3 +1,7 @@
 {
-  "reads": "s3://ccr-genomics-testdata/testdata/Test*_R_T_R{1,2}.fastq.gz"
+  "reads": "s3://ccr-genomics-testdata/testdata/Test*_R_T_R{1,2}.fastq.gz",
+  "genome_index": "s3://ccr-genomics-testdata/References/index-STAR_2.7.9a",
+  "gtf":  "s3://ccr-genomics-testdata/References/gencode.v37lift37.annotation_ERCC92.gtf",
+  "rsem_index": "s3://ccr-genomics-testdata/References/rsem_1.3.2",
+  "resultsdir": "s3://agc-424336837382-us-east-1/nfmvpout"
 }
Original file line number	Diff line number	Diff line change
Expand Up		@@ -5,3 +5,4 @@
		],
		"engineOptions": "-resume -profile test -r main"
		}