fix: Add fastq-screen results to multiqc input

CCRGeneticsBranch · Sep 17, 2024 · 76fd31e · 76fd31e
1 parent 29e87dd
commit 76fd31e
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diff --git a/workflows/Tumor_Normal_RNAseq_WF.nf b/workflows/Tumor_Normal_RNAseq_WF.nf
@@ -600,6 +600,7 @@ multiqc_exome_input = Exome_common_WF.out.Fastqc_out
             .join(Exome_common_WF.out.kraken)
             .join(Exome_common_WF.out.exome_qc)
             .join(Exome_common_WF.out.markdup_txt)
+            .join(Exome_common_WF.out.fastq_screen)
 
 multiqc_exome_status = multiqc_exome_input.branch{
     normal: it[0].type == "normal_DNA" || it[0].type == "blood_DNA"

diff --git a/workflows/Tumor_Normal_WF.nf b/workflows/Tumor_Normal_WF.nf
@@ -471,6 +471,7 @@ multiqc_input = Exome_common_WF.out.Fastqc_out
             .join(Exome_common_WF.out.kraken)
             .join(Exome_common_WF.out.exome_qc)
             .join(Exome_common_WF.out.markdup_txt)
+            .join(Exome_common_WF.out.fastq_screen)
 
 
 multiqc_status = multiqc_input.branch{