update namelist tables for consistent formatting

doc/source/user_guide/ug_case_settings.rst

@@ -185,8 +185,8 @@ setup_nml
    "", "``y1``", "write restart once after ``dumpfreq_n`` years", ""
    "", "``1``", "write restart every ``dumpfreq_n`` time steps", ""
    "", "``11``", "write restart once after ``dumpfreq_n`` time steps", ""
-   "``dumpfreq_base``", "init", "restart output frequency relative to year_init, month_init, day_init", "'init','init','init','init','init'"
-   "", "zero", "restart output frequency relative to year-month-day of 0000-01-01", ""
+   "``dumpfreq_base``", "``init``", "restart output frequency relative to year_init, month_init, day_init", "'init','init','init','init','init'"
+   "", "``zero``", "restart output frequency relative to year-month-day of 0000-01-01", ""
    "``dumpfreq_n``", "integer array", "write restart frequency with ``dumpfreq``", "1,1,1,1,1"
    "``dump_last``", "logical", "write restart on last time step of simulation", "``.false.``"
    "``histfreq``", "``d``", "write history every ``histfreq_n`` days", "'1','h','d','m','y'"
@@ -195,8 +195,8 @@ setup_nml
    "", "``x``", "unused frequency stream (not written)", ""
    "", "``y``", "write history every ``histfreq_n`` years", ""
    "", "``1``", "write history every ``histfreq_n`` time step", ""
-   "``histfreq_base``", "init", "history output frequency relative to year_init, month_init, day_init", "'zero','zero','zero','zero','zero'"
-   "", "zero", "history output frequency relative to year-month-day of 0000-01-01", ""
+   "``histfreq_base``", "``init``", "history output frequency relative to year_init, month_init, day_init", "'zero','zero','zero','zero','zero'"
+   "", "``zero``", "history output frequency relative to year-month-day of 0000-01-01", ""
    "``histfreq_n``", "integer array", "frequency history output is written with ``histfreq``", "1,1,1,1,1"
    "``history_chunksize``", "integer array", "chunksizes (x,y) for history output (hdf5 only)", "0,0"
    "``history_deflate``", "integer", "compression level (0 to 9) for history output (hdf5 only)", "0"
@@ -215,9 +215,9 @@ setup_nml
    "", "``pnetcdf5``", "write history files with pnetcdf cdf5 (netcdf3-64bit-data) format", ""
    "``history_iotasks``", "integer", "pe io tasks for history output with history_root and history_stride (PIO only), -99=internal default", "-99"
    "``history_precision``", "integer", "history file precision: 4 or 8 byte", "4"
-   "``history_rearranger``", "box", "box io rearranger option for history output (PIO only)", "default"
-   "", "default", "internal default io rearranger option for history output", ""
-   "", "subset", "subset io rearranger option for history output", ""
+   "``history_rearranger``", "``box``", "box io rearranger option for history output (PIO only)", "default"
+   "", "``default``", "internal default io rearranger option for history output", ""
+   "", "``subset``", "subset io rearranger option for history output", ""
    "``history_root``", "integer", "pe root task for history output with history_iotasks and history_stride (PIO only), -99=internal default", "-99"
    "``history_stride``", "integer", "pe stride for history output with history_iotasks and history_root (PIO only), -99=internal default", "-99"
    "``hist_avg``", "logical", "write time-averaged data", "``.true.,.true.,.true.,.true.,.true.``"
@@ -266,9 +266,9 @@ setup_nml
    "", "``pnetcdf2``", "write restart files with pnetcdf cdf2 (netcdf3-64bit-offset) format", ""
    "", "``pnetcdf5``", "write restart files with pnetcdf cdf5 (netcdf3-64bit-data) format", ""
    "``restart_iotasks``", "integer", "pe io tasks for restart output with restart_root and restart_stride (PIO only), -99=internal default", "-99"
-   "``restart_rearranger``", "box", "box io rearranger option for restart output (PIO only)", "default"
-   "", "default", "internal default io rearranger option for restart output", ""
-   "", "subset", "subset io rearranger option for restart output", ""
+   "``restart_rearranger``", "``box``", "box io rearranger option for restart output (PIO only)", "default"
+   "", "``default``", "internal default io rearranger option for restart output", ""
+   "", "``subset``", "subset io rearranger option for restart output", ""
    "``restart_root``", "integer", "pe root task for restart output with restart_iotasks and restart_stride (PIO only), -99=internal default", "-99"
    "``restart_stride``", "integer", "pe stride for restart output with restart_iotasks and restart_root (PIO only), -99=internal default", "-99"
    "``runid``", "string", "label for run (currently CESM only)", "'unknown'"
@@ -324,13 +324,13 @@ grid_nml
    "", "``2``", "WMO standard categories", ""
    "", "``3``", "asymptotic scheme", ""
    "``kmt_file``", "string", "name of land mask file to be read", "``unknown_kmt_file``"
-   "``kmt_type``", "boxislands", "ocean/land mask set internally, complex test geometory", "file"
-   "", "channel", "ocean/land mask set internally as zonal channel", ""
-   "", "channel_oneeast", "ocean/land mask set internally as single gridcell east-west zonal channel", ""
-   "", "channel_onenorth", "ocean/land mask set internally as single gridcell north-south zonal channel", ""
-   "", "default", "ocean/land mask set internally, land in upper left and lower right of domain, ", ""
-   "", "file", "ocean/land mask setup read from file, see kmt_file", ""
-   "", "wall", "ocean/land mask set at right edge of domain", ""
+   "``kmt_type``", "``boxislands``", "ocean/land mask set internally, complex test geometory", "file"
+   "", "``channel``", "ocean/land mask set internally as zonal channel", ""
+   "", "``channel_oneeast``", "ocean/land mask set internally as single gridcell east-west zonal channel", ""
+   "", "``channel_onenorth``", "ocean/land mask set internally as single gridcell north-south zonal channel", ""
+   "", "``default``", "ocean/land mask set internally, land in upper left and lower right of domain, ", ""
+   "", "``file``", "ocean/land mask setup read from file, see kmt_file", ""
+   "", "``wall``", "ocean/land mask set at right edge of domain", ""
    "``latrefrect``","real","lower left corner lat for rectgrid in deg", "71.35"
    "``lonrefrect``","real","lower left corner lon for rectgrid in deg", "-156.5"
    "``nblyr``", "integer", "number of zbgc layers", "0"
@@ -559,7 +559,7 @@ shortwave_nml
 
    "", "", "", ""
    "``ahmax``", "real", "albedo is constant above this thickness in meters", "0.3"
-   "``albedo_type``", "`ccsm3``", "NCAR CCSM3 albedo implementation", "``ccsm3``"
+   "``albedo_type``", "``ccsm3``", "NCAR CCSM3 albedo implementation", "``ccsm3``"
    "", "``constant``", "four constant albedos", ""
    "``albicei``", ":math:`0<\alpha <1`", "near infrared ice albedo for thicker ice", "0.36"
    "``albicev``", ":math:`0<\alpha <1`", "visible ice albedo for thicker ice", "0.78"
@@ -620,9 +620,9 @@ snow_nml
    "", "``ITD``", "ITD snow redistribution scheme", ""
    "", "``ITDrdg``", "ITDrdg snow redistribution scheme", ""
    "", "``none``", "snow redistribution scheme off", ""
-   "``snw_aging_table``", "file", "read 1D and 3D fields for dry metamorophsis lookup table", "test"
-   "", "snicar", "read 3D fields for dry metamorophsis lookup table", ""
-   "", "test", "internally generated dry metamorophsis lookup table for testing", ""
+   "``snw_aging_table``", "'file'", "read 1D and 3D fields for dry metamorophsis lookup table", "test"
+   "", "``snicar``", "read 3D fields for dry metamorophsis lookup table", ""
+   "", "``test``", "internally generated dry metamorophsis lookup table for testing", ""
    "``snw_drdt0_fname``", "string", "snow aging file drdt0 fieldname", "unknown"
    "``snw_filename``", "string", "snow aging table data filename", "unknown"
    "``snw_kappa_fname``", "string", "snow aging file kappa fieldname", "unknown"
@@ -648,10 +648,9 @@ forcing_nml
    :widths: 15, 15, 30, 15 
 
    "", "", "", ""
-   "``atmbndy``", "string", "bulk transfer coefficients", "``similarity``"
-   "", "``similarity``", "stability-based boundary layer", ""
-   "", "``constant``", "constant-based boundary layer", ""
+   "``atmbndy``", "``constant``", "constant-based bulk transfer coeff boundary layer", "``similarity``"
    "", "``mixed``", "stability-based boundary layer for wind stress, constant-based for sensible+latent heat fluxes", ""
+   "", "``similarity``", "stability-based bulk transfer coeff boundary layer", ""
    "``atmiter_conv``", "real", "convergence criteria for ustar", "0.0"
    "``atm_data_dir``", "string", "path or partial path to atmospheric forcing data directory", ""
    "``atm_data_format``", "``bin``", "read direct access binary atmo forcing file format", "``bin``"
@@ -709,8 +708,7 @@ forcing_nml
    "", "``uniform``", "ice defined at all grid points", ""
    "``ice_ref_salinity``", "real", "sea ice salinity for coupling fluxes (ppt)", "4.0"
    "``iceruf``", "real", "ice surface roughness at atmosphere interface in meters", "0.0005"
-   "``l_mpond_fresh``", "``.false.``", "release pond water immediately to ocean", "``.false.``"
-   "", "``true``", "retain (topo) pond water until ponds drain", ""
+   "``l_mpond_fresh``", "logical", "retain (topo) pond water until ponds drain", "``.false.``"
    "``natmiter``", "integer", "number of atmo boundary layer iterations", "5"
    "``nfreq``", "integer", "number of frequencies in ocean surface wave spectral forcing", "25"
    "``oceanmixed_file``", "string", "data file containing ocean forcing data", "'unknown_oceanmixed_file'"