rename parameter for clarity

assigned_deltamass -> comet_deltamass
CNIC-Proteomics · Mar 16, 2022 · 2503bfa · 2503bfa
1 parent e1943d3
commit 2503bfa
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/RECOMfilterer.py b/RECOMfilterer.py
@@ -222,7 +222,7 @@ def main(args):
     decimal_places = int(config._sections['General']['decimal_places'])
     t_increase = float(config._sections['RECOMfilterer']['increase_threshold'])
     proteincolumn = config._sections['RECOMfilterer']['protein_column']
-    assigneddm = config._sections['RECOMfilterer']['assigned_deltamass']
+    assigneddm = config._sections['RECOMfilterer']['comet_deltamass']
     recomdm = config._sections['RECOMfilterer']['recom_deltamass']
     decoyprefix = config._sections['RECOMfilterer']['decoyprefix']
     recom_score = config._sections['RECOMfilterer']['recom_score']

diff --git a/config/SHIFTS.ini b/config/SHIFTS.ini
@@ -50,7 +50,7 @@ recom_score = Closest_Xcorr		# Name of column containing Recom score (case-sensi
 comet_score = xcorr				# Name of column containing Comet score (case-sensitive)
 corr_xcorr = 0 			# Add corrected xcorr output column (0=no, 1=yes)
 protein_column = protein			# Name of column containing protein IDs (case-sensitive)
-assigned_deltamass = Assigned_deltaMass	# Name of column containing the assigned deltamass (case-sensitive)
+comet_deltamass = cal_dm_mh	# Name of column containing the assigned deltamass (case-sensitive)
 recom_deltamass = Closest_Deltamass # Name of column containing the RECOM deltamass (case-sensitive)
 decoyprefix = DECOY				# Prefix used for decoy protein IDs (case-sensitive)