re.IGNORECASE

ProteinAssigner_v4.py

@@ -559,9 +559,15 @@ def main(paramsDict):
             epilog=f'''\
 Created 2021-11-24, Rafael Barrero Rodriguez
 Usage:
-    {script_name} -c "path to YAML config file"
-    {script_name} -i "Path\To\Input.File" -o "Path\To\Output.File" -s "Sequence" -q "Protein_Accessions" "Protein_Descriptions" -qm "Protein_Accessions_MPP" "Protein_Descriptions_MPP" -w 2
-    {script_name} -i "Path\To\Input.File" -o "Path\To\Output.File" -s "Sequence" -f "Path\To\Fasta.fa" -cd "Protein_Description_Candidate" -ca "Protein_Accession_Candidate" -ma "Protein_Accessions_MPP" -md "Protein_Descriptions_MPP" -w 2
+    FROM CONFIG:
+        {script_name} -c "path to YAML config file"
+    
+    FROM COMMAND LINE (iSanXoT):
+        Column mode:
+        {script_name} -i "Path\To\Input.File" -o "Path\To\Output.File" -s "Sequence" -q "Protein_Accession_Candidate" -qm "Protein_Accessions_MPP" -w 4
+    
+        Fasta mode:
+        {script_name} -i "Path\To\Input.File" -o "Path\To\Output.File" -s "Sequence" -f "Path\To\Fasta.fa" -cd "Protein_Description_Candidate" -ca "Protein_Accession_Candidate" -qm "Protein_Accessions_MPP" -md "Protein_Descriptions_MPP" -w 4
 ''')
 
 
@@ -636,7 +642,7 @@ def main(paramsDict):
             "n_cores": args.n_workers,
         }
 
-    paramsDict['regex'] = [re.compile(i) for i in re.split(r'(?<!\\)/', paramsDict['regex'].strip('/ '))]
+    paramsDict['regex'] = [re.compile(i, re.IGNORECASE) for i in re.split(r'(?<!\\)/', paramsDict['regex'].strip('/ '))]
 
 
     # logging debug level. By default, info level
@@ -655,4 +661,4 @@ def main(paramsDict):
     t0 = time()
     main(paramsDict)
     m, s = divmod(time()-t0,60)
-    logging.info(f'End script: {int(m)}m and {round(s,2)}s') 
+    logging.info(f'End script: {int(m)}m and {round(s,2)}s')