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default peak_outlier_value set to 0
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alaguillog authored Oct 16, 2024
1 parent 5bdf216 commit a51dc46
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions config/SHIFTS.ini
Original file line number Diff line number Diff line change
Expand Up @@ -64,11 +64,11 @@ score_column = xcorr # Name of column containing score (case-sensitive
peak_column = PeakAssignation # Name of column containing the peak/orphan labels (case-sensitive)
dm_region_limit = -56 # Deltamass region limit for Global FDR. Two regions will be created: DM equal to or above and DM below this value
dm_column = deltaMass # Name of column containing deltamass for region limits (case-sensitive)
peak_outlier_value = 0 # Peak FDR value to be assigned to orphans (default=1)
peak_outlier_value = 0 # Peak FDR value to be assigned to orphans (default=0)
global_threshold = 0.05 # Maximum global FDR value
local_threshold = 0.01 # Maximum local FDR value
peak_threshold = 0.01 # Maximum peak FDR value

[Logging]
create_log = 1 # Create log file, 0=no 1=yes
create_ini = 0 # Create copy of INI file in input directory, 0=no 1=yes (specifying custom parameters in the command line will always create a copy of INI file)
create_ini = 0 # Create copy of INI file in input directory, 0=no 1=yes (specifying custom parameters in the command line will always create a copy of INI file)

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