Merge pull request #4 from CausalInference/dev

update README
CausalInference · Nov 25, 2024 · f5cba6d · f5cba6d
2 parents 8004b22 + 6f3359a
commit f5cba6d
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Showing 7 changed files with 8 additions and 9 deletions.
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -33,7 +33,7 @@ Imports:
     parallel,
     foreach,
     stringr,
-    tidyverse,
+    magrittr,
     dplyr,
     rlang,
     reshape2,

diff --git a/NAMESPACE b/NAMESPACE
@@ -15,19 +15,19 @@ import(doParallel)
 import(dplyr)
 import(foreach)
 import(ggplot2)
+import(magrittr)
 import(methods)
 import(nnet)
 import(parallel)
 import(reshape2)
-import(rlang)
 import(speedglm)
 import(stringr)
-import(tidyverse)
 importFrom(Hmisc,rcspline.eval)
 importFrom(data.table,SJ)
 importFrom(data.table,as.data.table)
 importFrom(data.table,data.table)
 importFrom(data.table,setkey)
+importFrom(rlang,is_formula)
 importFrom(splines,ns)
 importFrom(stats,as.formula)
 importFrom(stats,binomial)

diff --git a/R/ICE.R b/R/ICE.R
@@ -588,9 +588,10 @@
 #' plot(ice_fit5b)
 #' 
 #' 
-#' @import tidyverse rlang methods dplyr stringr
+#' @import magrittr methods dplyr stringr
 #' @importFrom Hmisc rcspline.eval
 #' @importFrom splines ns
+#' @importFrom rlang is_formula
 #' @export
 
 ice <- function(data, time_points, id, time_name,

diff --git a/R/ICE_pool.R b/R/ICE_pool.R
@@ -59,7 +59,7 @@
 #' \item{outcome_by_step}{A list containing the fitted models with the summary, standard errors of the coefficients, variance-covariance matrices of the parameters, and the root mean square error (RMSE) values for the outcome model of each subsequent iteration in the ICE algorithm.}
 #' \item{comp_by_step}{A list containing the fitted models with the summary, standard errors of the coefficients, variance-covariance matrices of the parameters, and the root mean square error (RMSE) values for the competing model of each subsequent iteration in the ICE algorithm (if applicable). Could be \code{NULL} if \code{competing_name} is \code{NULL}.}
 #' \item{hazard_by_step}{A list containing the fitted models with the summary, standard errors of the coefficients, variance-covariance matrices of the parameters, and the root mean square error (RMSE) values for the hazard model of each iteration in the ICE algorithm (if applicable). Could be \code{NULL} if \code{hazard_based} is FALSE.}
-#' @import reshape2 tidyverse speedglm dplyr stringr
+#' @import reshape2 magrittr speedglm dplyr stringr
 #' @importFrom stats reshape
 #' @importFrom stats quasibinomial
 #' @importFrom stats plogis

diff --git a/R/ICE_stratify.R b/R/ICE_stratify.R
@@ -61,7 +61,7 @@
 #' \item{outcome_by_step}{A list containing the fitted models with the summary, standard errors of the coefficients, variance-covariance matrices of the parameters, and the root mean square error (RMSE) values for the outcome model of each subsequent iteration in the ICE algorithm.}
 #' \item{comp_by_step}{A list containing the fitted models with the summary, standard errors of the coefficients, variance-covariance matrices of the parameters, and the root mean square error (RMSE) values for the competing model of each subsequent iteration in the ICE algorithm (if applicable). Could be \code{NULL} if \code{competing_name} is \code{NULL}.}
 #' \item{hazard_by_step}{A list containing the fitted models with the summary, standard errors of the coefficients, variance-covariance matrices of the parameters, and the root mean square error (RMSE) values for the hazard model of each iteration in the ICE algorithm (if applicable). Could be \code{NULL} if \code{hazard_based} is FALSE.}
-#' @import tidyverse reshape2 nnet speedglm dplyr stringr
+#' @import magrittr reshape2 nnet speedglm dplyr stringr
 #' @importFrom stats reshape
 #' @importFrom stats quasibinomial
 #' @importFrom stats fitted

diff --git a/R/bootstrap_ice.R b/R/bootstrap_ice.R
@@ -56,7 +56,7 @@
 #' \item{ref_model_err_mssg}{A list of strings for error messages of any model error from each bootstrap replicate for the reference intervention.}
 #' \item{ref_data_err_mssg}{A list of strings for error messages of any data error from each bootstrap replicate for the reference intervention.}
 #'
-#' @import doParallel parallel foreach tidyverse dplyr stringr
+#' @import doParallel parallel foreach magrittr dplyr stringr
 #' @importFrom data.table SJ
 #' @importFrom data.table as.data.table
 #' @importFrom data.table setkey

diff --git a/README.md b/README.md
@@ -6,8 +6,6 @@
   ![Downloads](https://cranlogs.r-pkg.org/badges/grand-total/gfoRmulaICE)
   <!-- badges: end -->
 
-(to verify each of the example works)
-
 ## How to install 
 
 Installation from CRAN: