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Dessimoz Lab

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  1. read2tree read2tree Public

    a tool for inferring species tree from sequencing reads

    Python 146 18

  2. fold_tree fold_tree Public

    snakemake pipeline for creating trees from sequence sets

    Jupyter Notebook 74 9

  3. FastOMA FastOMA Public

    FastOMA is a scalable software package to infer orthology relationship.

    Python 72 14

  4. OMArk OMArk Public

    Python 70 7

  5. phylo-io phylo-io Public

    Phylo.IO JS tree viewer

    JavaScript 28 10

  6. omamer omamer Public

    OMAmer - tree-driven and alignment-free protein assignment to sub-families

    Python 17 5

Repositories

Showing 10 of 44 repositories
  • foldtree2 Public

    foldtree2

    DessimozLab/foldtree2’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Mar 12, 2025
  • FastOMA Public

    FastOMA is a scalable software package to infer orthology relationship.

    DessimozLab/FastOMA’s past year of commit activity
    Python 72 MPL-2.0 14 8 1 Updated Mar 11, 2025
  • phylo-io Public

    Phylo.IO JS tree viewer

    DessimozLab/phylo-io’s past year of commit activity
    JavaScript 28 MIT 10 5 1 Updated Mar 11, 2025
  • OMArk Public
    DessimozLab/OMArk’s past year of commit activity
    Python 70 LGPL-3.0 7 6 3 Updated Mar 7, 2025
  • edgehog Public

    Infering ancestral synteny with hierarchical orthologous groups

    DessimozLab/edgehog’s past year of commit activity
    Python 14 MIT 2 0 5 Updated Feb 26, 2025
  • nf-oma-browser-build Public

    Nextflow pipeline to convert OMA to OMA browser

    DessimozLab/nf-oma-browser-build’s past year of commit activity
    Nextflow 1 MIT 0 0 0 Updated Feb 21, 2025
  • omamer Public

    OMAmer - tree-driven and alignment-free protein assignment to sub-families

    DessimozLab/omamer’s past year of commit activity
    Python 17 LGPL-3.0 5 3 1 Updated Feb 21, 2025
  • yeast_fusion_segmenter Public

    retrain yolov8 to segment and label yeast cells with interupted fusion phenotypes

    DessimozLab/yeast_fusion_segmenter’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Feb 20, 2025
  • read2tree Public

    a tool for inferring species tree from sequencing reads

    DessimozLab/read2tree’s past year of commit activity
    Python 146 MIT 18 18 0 Updated Feb 19, 2025
  • HogProf Public

    Phylogenetic profiling with orthology data

    DessimozLab/HogProf’s past year of commit activity
    Jupyter Notebook 10 MIT 2 0 1 Updated Feb 11, 2025
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