update docs

DiseaseNeuroGenomics · Nov 20, 2024 · 120cc15 · 120cc15
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diff --git a/TODO b/TODO
@@ -1,4 +1,7 @@
 
+Nov 11, 2024
+# Better memory usage for parallel runs with SharedObject
+	https://www.bioconductor.org/packages/release/bioc/html/SharedObject.html
 
 
 

diff --git a/docs/articles/cell_covs.html b/docs/articles/cell_covs.html
diff --git a/docs/favicon.ico b/docs/favicon.ico
diff --git a/vignettes/cell_covs.Rmd b/vignettes/cell_covs.Rmd
@@ -129,6 +129,13 @@ res.dl <- dreamlet(res.proc, form)
 res.dl
 ```
 
+# Details
+ A variable in `colData(sce)` is handled according to if the variable is
+
+-  continuous: the mean per donor/cell type is stored in `metadata(pb)$aggr_means`
+- discrete
+  - [constant within each donor/cell type] it is stored in `colData(pb)`
+  - [varies within each donor/cell type] there is no good way to summarize it.  The variable is dropped.