Do not attempt to import mulea within clusters

ELTEbioinformatics · Feb 27, 2024 · b258c4e · b258c4e
1 parent 5ff709a
commit b258c4e
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Showing 3 changed files with 5 additions and 9 deletions.
diff --git a/R/RcppExports.R b/R/RcppExports.R
@@ -1,10 +1,7 @@
 # Generated by using Rcpp::compileAttributes() -> do not edit by hand
 # Generator token: 10BE3573-1514-4C36-9D1C-5A225CD40393
 
-enrichment_test_simulation <- function(DB_of_categories, list_of_all_genes, 
-                                       pool, selectSize, steps, randomSeed) 
-  {
-    .Call(`_mulea_enrichment_test_simulation`, DB_of_categories, 
-          list_of_all_genes, pool, selectSize, steps, randomSeed)
-  }
+enrichment_test_simulation <- function(DB_of_categories, list_of_all_genes, pool, selectSize, steps, randomSeed) {
+    .Call(`_mulea_enrichment_test_simulation`, DB_of_categories, list_of_all_genes, pool, selectSize, steps, randomSeed)
+}
 
diff --git a/R/set-based-enrichment-test.r b/R/set-based-enrichment-test.r
@@ -84,7 +84,6 @@ set.based.enrichment.test <- function(
             # envir = current_env
             clusterExport(cl,"seeds_per_thread", envir = current_env)
             clusterExport(cl,"steps_per_thread", envir = current_env)
-            clusterEvalQ(cl, library(mulea))
             result_of_paralel <- clusterApplyLB(cl=cl, seq_len(nthread), 
                 function(idx) {
                     simulation_result_tbl <-  tryCatch(

diff --git a/man/SetBasedEnrichmentTest-class.Rd b/man/SetBasedEnrichmentTest-class.Rd