testing knitting root dir

ESapenaVentura · Dec 1, 2022 · 8586d0b · 8586d0b
1 parent 3b1381e
commit 8586d0b
Showing 1 changed file with 3 additions and 2 deletions.
diff --git a/lrgasp_metrics/utilities/SQANTI3_Evaluation_run.R b/lrgasp_metrics/utilities/SQANTI3_Evaluation_run.R
@@ -38,7 +38,7 @@ library(data.table)
 library(tidyverse)
 #********************* Run Calculation scripts
 
-knitr::opts_knit$set(utilities.path)
+setwd(utilities.path)
 
 if (exists("sim_prefix")){
   source("LRGASP_calculations.simulation.R")
@@ -62,6 +62,7 @@ if (exists("sim_prefix")){
 rmarkdown::render(RMD, params = list(
   output.directory = rdata,
   Name = name,
-  Platform = platform  ), output_file = report.file
+  Platform = platform  ), output_file = report.file,
+  knit_root_dir = "/app/results"
 )