Code

Adding NOMAD APM app#34

Code

Open

mkuehbach wants to merge 24 commits intomainFAIRmat-NFDI/pynxtools-apm:mainfrom apm_appFAIRmat-NFDI/pynxtools-apm:apm_appCopy head branch name to clipboard

+833-220

Commits

Commits on Jan 9, 2025

• Initial code for a simple NOMAD app for atom probe

  atomprobe-tc

  committed
  e0ff30d

  Copy full SHA for e0ff30d

• Fixed appname, installed for a py3.11.11 nomad dev pyenv

  atomprobe-tc

  committed
  45ebb29

  Copy full SHA for 45ebb29

Commits on Jan 10, 2025

• Minor edits on the app

  atomprobe-tc

  committed
  a9ae578

  Copy full SHA for a9ae578

• Edits to the documentation in prep for apmapp

  atomprobe-tc

  committed
  192691a

  Copy full SHA for 192691a

• precommit updated

  atomprobe-tc

  committed
  cf672b5

  Copy full SHA for cf672b5

Commits on Jan 25, 2025

• Configuration for parsing dictionary of controlled keyword - value pairs with information from AP Suite / IVAS

  mkuehbach

  authored
  f005457

  Copy full SHA for f005457

Commits on Jan 26, 2025

• Implementation skeleton for YAML IVAS/APSuite parser

  atomprobe-tc

  committed
  54eed6e

  Copy full SHA for 54eed6e

• Using pynxtools with custom NeXus definitions to enable that NOMAD can detect these

  atomprobe-tc

  committed
  7c77640

  Copy full SHA for 7c77640

• Added an optional deps group nomad to assure that an installation of pynxtools-apm does not actively modify the environment with versions of these that nomad needs, otherwise nomad did not start re…

  Show description for d587171
  atomprobe-tc

  committed
  d587171

  Copy full SHA for d587171

Commits on Jan 27, 2025

• Working first version of the Cameca-specific parsing to NeXus

  atomprobe-tc

  committed
  d032dd4

  Copy full SHA for d032dd4

• Bumped ruff

  atomprobe-tc

  committed
  66023fa

  Copy full SHA for 66023fa

• minor edits

  atomprobe-tc

  committed
  069d267

  Copy full SHA for 069d267

Commits on Jan 28, 2025

• Edits on configuration in response to how cameca example worked in nomad

  atomprobe-tc

  committed
  f088889

  Copy full SHA for f088889

• Bugfixes, mainly type conversions for apm_app

  atomprobe-tc

  committed
  f72395c

  Copy full SHA for f72395c

Commits on Jan 30, 2025

• Refactored event records

  atomprobe-tc

  committed
  8936a45

  Copy full SHA for 8936a45

• edits

  atomprobe-tc

  committed
  075c8b9

  Copy full SHA for 075c8b9

• fix imprecise statement

  atomprobe-tc

  committed
  04f5ac8

  Copy full SHA for 04f5ac8

• Several bugfixes for apm_app cameca examples, heuristics for leap model and pulse mode

  atomprobe-tc

  committed
  94dc834

  Copy full SHA for 94dc834

• bugfix leap model heuristics

  atomprobe-tc

  committed
  3fee393

  Copy full SHA for 3fee393

Commits on Jan 31, 2025

• Last changes before switching to refactored NXapm, which might break some paths in the parser as apm-specific base classes were heavily reassessed in preparation for NIAC revision of NXapm to becom…

  Show description for ffea6b0
  atomprobe-tc

  committed
  ffea6b0

  Copy full SHA for ffea6b0

• Using refactored NXapm, possibly BREAKING CHANGE, next through testing with run-throughs

  atomprobe-tc

  committed
  63f7eb5

  Copy full SHA for 63f7eb5

• Fix #35 via #32

  atomprobe-tc

  committed
  1a2182f

  Copy full SHA for 1a2182f

Commits on Feb 1, 2025

• Fixes NOMAD APM example

  atomprobe-tc

  committed
  12bd21b

  Copy full SHA for 12bd21b

• run_number now a countable

  atomprobe-tc

  committed
  eaa800d

  Copy full SHA for eaa800d