STM exmple wraped up.

src/pynxtools_spm/nomad/examples/stm/STMDefaultExample/Identifier_DemoSTMCollectionIdentifier5e1cc4dbd1746df78c6beb1f3c8c3378.archive.json

@@ -0,0 +1 @@
+{"m_def": "nomad.datamodel.datamodel.EntryArchive", "data": {"m_def": "nomad.datamodel.metainfo.basesections.Entity", "m_parent_sub_section": "data", "lab_id": "DemoSTMCollectionIdentifier-1234"}, "metadata": {"m_def": "nomad.datamodel.datamodel.EntryMetadata", "m_parent_sub_section": "metadata", "entry_type": "identifier", "domain": "nexus"}}

src/pynxtools_spm/nomad/examples/stm/STMDefaultExample/Identifier_DemoSTMExperimentIdentifier223246e46b395940cb898e3ad0e7ba03.archive.json

@@ -0,0 +1 @@
+{"m_def": "nomad.datamodel.datamodel.EntryArchive", "data": {"m_def": "nomad.datamodel.metainfo.basesections.Entity", "m_parent_sub_section": "data", "lab_id": "DemoSTMExperimentIdentifier-1234"}, "metadata": {"m_def": "nomad.datamodel.datamodel.EntryMetadata", "m_parent_sub_section": "metadata", "entry_type": "identifier", "domain": "nexus"}}

src/pynxtools_spm/nomad/examples/stm/STM.scheme.archive.yaml → src/pynxtools_spm/nomad/examples/stm/STMDefaultExample/STM.scheme.archive.yaml

@@ -1,7 +1,7 @@
 definitions:
   name: An ELN example for STM ( Scanning Tunneling Microscopy).
   sections:
-    sts:
+    stm:
       base_sections:
         - pynxtools.nomad.dataconverter.NexusDataConverter
         - nomad.datamodel.data.EntryData
@@ -218,6 +218,7 @@ definitions:
                   quantities:
                     tip_temp:
                       type: np.float64
+                      unit: kelvin
                       m_annotations:
                         eln:
                           component: NumberEditQuantity
@@ -228,6 +229,7 @@ definitions:
                         At least one field from tip_temp, cryo_bottom_temp and cryo_shield_temp must be provided.
                     cryo_bottom_temp:
                       type: np.float64
+                      unit: kelvin
                       m_annotations:
                         eln:
                           component: NumberEditQuantity
@@ -237,6 +239,7 @@ definitions:
                         At least one field from tip_temp, cryo_bottom_temp and cryo_shield_temp must be provided.
                     cryo_shield_temp:
                       type: np.float64
+                      unit: kelvin
                       m_annotations:
                         eln:
                           component: NumberEditQuantity

src/pynxtools_spm/nomad/examples/stm/STMDefaultExample/STMDefaultExample.archive.json

@@ -0,0 +1 @@
+{"data":{"m_def":"../upload/raw/STM.scheme.archive.yaml#/definitions/section_definitions/0","reader":"spm","nxdl":"NXstm","input_files":["STM_nanonis_generic_4_5.sxm"],"default":"z_backward","definition":"NXstm","experiment_technique":"STM","scan_mode":"constant current","experiment_description":"<p>Experiment desctiption goes here.</p>","experiment_identifier":{"identifier":"DemoSTMExperimentIdentifier-1234"},"collection_identifier":{"identifier":"DemoSTMCollectionIdentifier-1234"},"user":{"name":"Rubel","affiliation":["HU"],"email":["rubel.mozumder@physik.hu-berlin.de"]},"experiment_instrument":{"hardware":{"name":"Nanonis","vendor":"Nanonis","model":"Generic 4.5","model/@version":"4.5"},"software":{"name":"Nanonis","vendor":"Nanonis","model":"Generic 4.5","model/@version":"4.5"},"scan_environment":{"tip_temp":100}},"Sample":{"description":"<p>The Sample description goes here.</p>","name":"DemoSample","History":{"notes":"<p>The sample history goes here.</p>"}}}}

src/pynxtools_spm/nomad/examples/stm/STMDefaultExample/eln_data.yaml

@@ -0,0 +1,35 @@
+Sample:
+  History:
+    notes: <p>The sample history goes here.</p>
+  description: <p>The Sample description goes here.</p>
+  name: DemoSample
+collection_identifier:
+  identifier: DemoSTMCollectionIdentifier-1234
+default: z_backward
+definition: NXstm
+experiment_description: <p>Experiment desctiption goes here.</p>
+experiment_identifier:
+  identifier: DemoSTMExperimentIdentifier-1234
+experiment_instrument:
+  hardware:
+    model: Generic 4.5
+    model/@version: '4.5'
+    name: Nanonis
+    vendor: Nanonis
+  scan_environment:
+    tip_temp:
+      unit: K
+      value: 100.0
+  software:
+    model: Generic 4.5
+    model/@version: '4.5'
+    name: Nanonis
+    vendor: Nanonis
+experiment_technique: STM
+scan_mode: constant current
+user:
+  affiliation:
+  - HU
+  email:
+  - rubel.mozumder@physik.hu-berlin.de
+  name: Rubel

src/pynxtools_spm/nomad/examples/stm/STMExamleWithCustomization/Identifier_DemoSTMCollectionIdentifier09db9083edc3d8f12f081f403f901ee8.archive.json

@@ -0,0 +1 @@
+{"m_def": "nomad.datamodel.datamodel.EntryArchive", "data": {"m_def": "nomad.datamodel.metainfo.basesections.Entity", "m_parent_sub_section": "data", "lab_id": "DemoSTMCollectionIdentifier-123"}, "metadata": {"m_def": "nomad.datamodel.datamodel.EntryMetadata", "m_parent_sub_section": "metadata", "entry_type": "identifier", "domain": "nexus"}}

src/pynxtools_spm/nomad/examples/stm/STMExamleWithCustomization/Identifier_DemoSTMExprimentIdentifier43678e78fc368d09bb3b9c950ca9a6bd.archive.json

@@ -0,0 +1 @@
+{"m_def": "nomad.datamodel.datamodel.EntryArchive", "data": {"m_def": "nomad.datamodel.metainfo.basesections.Entity", "m_parent_sub_section": "data", "lab_id": "DemoSTMExprimentIdentifier-123"}, "metadata": {"m_def": "nomad.datamodel.datamodel.EntryMetadata", "m_parent_sub_section": "metadata", "entry_type": "identifier", "domain": "nexus"}}