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src/pynxtools_spm/nomad/examples/afm/A151216.123306-02602.sxm
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src/pynxtools_spm/nomad/examples/afm/AFM.scheme.archive.yaml
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,276 @@ | ||
| definitions: | ||
| name: An ELN example for AFM ( Atomic Force Microscopy). | ||
| sections: | ||
| sts: | ||
| base_sections: | ||
| - pynxtools.nomad.dataconverter.NexusDataConverter | ||
| - nomad.datamodel.data.EntryData | ||
| m_annotations: | ||
| template: | ||
| reader: spm | ||
| nxdl: NXafm | ||
| eln: | ||
| hide: [] | ||
| quantities: | ||
| default: | ||
| type: str | ||
| m_annotations: | ||
| eln: | ||
| component: StringEditQuantity | ||
| description: | | ||
| The name of the NXdata group that comes as child of the entry group for default plot visualization | ||
| to be displayed upon the entry of NeXus file. | ||
| definition: | ||
| type: | ||
| type_kind: Enum | ||
| type_data: | ||
| - NXafm | ||
| m_annotations: | ||
| eln: | ||
| component: EnumEditQuantity | ||
| description: | | ||
| Name of the definitions from NeXus app def designed for STS experiments, one can use | ||
| NXsts or NXspm, but NXsts is recommended. | ||
| scan_mode: | ||
| type: | ||
| type_kind: Enum | ||
| type_data: | ||
| - contact mode | ||
| - tapping mode | ||
| - non-contact mode | ||
| - Kelvin probe | ||
| - electric force | ||
| m_annotations: | ||
| eln: | ||
| component: EnumEditQuantity | ||
| description: | | ||
| Mode of scan in AFM experiment. | ||
| experiment_description: | ||
| type: str | ||
| m_annotations: | ||
| eln: | ||
| component: RichTextEditQuantity | ||
| description: | | ||
| Descriptive comments for this experiment, added by the experimenter in eln or | ||
| coming from the output file, e.g. Comment01 SYNC & Filter LP 8order WITHDRAW | ||
| 600 steps, locked Au(111), 50pA, 100 mV set point, 1mV DCA, 973Hz,138 | ||
| 1st H, -84 2nd H. | ||
| sub_sections: | ||
| experiment_identifier: | ||
| section: | ||
| m_annotations: | ||
| eln: | ||
| overview: true | ||
| quantities: | ||
| identifier: | ||
| type: str | ||
| m_annotations: | ||
| eln: | ||
| component: StringEditQuantity | ||
| description: | | ||
| An unique identifier fot the experiment. e.g. the identifier | ||
| could be specific for a lab or experiment team. | ||
| collection_identifier: | ||
| section: | ||
| m_annotations: | ||
| eln: | ||
| overview: true | ||
| quantities: | ||
| identifier: | ||
| type: str | ||
| m_annotations: | ||
| eln: | ||
| component: StringEditQuantity | ||
| description: | | ||
| An unique identifier of a collection. Use this | ||
| if the experiment if part of a collection of experiments | ||
| user: | ||
| section: | ||
| m_annotations: | ||
| eln: | ||
| overview: true | ||
| quantities: | ||
| name: | ||
| type: str | ||
| m_annotations: | ||
| eln: | ||
| component: StringEditQuantity | ||
| description: | | ||
| Name of the user who performed the experiment. | ||
| affiliation: | ||
| type: str | ||
| shape: "*" | ||
| m_annotations: | ||
| eln: | ||
| component: StringEditQuantity | ||
| description: | | ||
| Affiliation of the user who performed the experiment. | ||
| email: | ||
| type: str | ||
| shape: "*" | ||
| m_annotations: | ||
| eln: | ||
| component: StringEditQuantity | ||
| description: | | ||
| List of emails from users who performed the experiment. | ||
| experiment_instrument: | ||
| section: | ||
| m_annotations: | ||
| eln: | ||
| overview: true | ||
| sub_sections: | ||
| hardware: | ||
| section: | ||
| m_annotations: | ||
| eln: | ||
| overview: true | ||
| quantities: | ||
| name: | ||
| type: str | ||
| m_annotations: | ||
| eln: | ||
| component: StringEditQuantity | ||
| description: | | ||
| Name of the hardware. (e.g. Nanonis). | ||
| model: | ||
| type: str | ||
| m_annotations: | ||
| eln: | ||
| component: StringEditQuantity | ||
| description: | | ||
| Version or model of the component named by the manufacturer (e.g. Nanonis). | ||
| model/@version: | ||
| type: str | ||
| m_annotations: | ||
| eln: | ||
| component: StringEditQuantity | ||
| description: | | ||
| If model has a distinquishable version (e.g. BP5e). | ||
| software: | ||
| section: | ||
| m_annotations: | ||
| eln: | ||
| overview: true | ||
| quantities: | ||
| name: | ||
| type: str | ||
| m_annotations: | ||
| eln: | ||
| component: StringEditQuantity | ||
| description: | | ||
| Name of the software. (e.g. Nanonis). | ||
| model: | ||
| type: str | ||
| m_annotations: | ||
| eln: | ||
| component: StringEditQuantity | ||
| description: | | ||
| Version or model of the component named by the manufacturer (e.g. Nanonis). | ||
| model/@version: | ||
| type: str | ||
| m_annotations: | ||
| eln: | ||
| component: StringEditQuantity | ||
| description: | | ||
| If model has a distinquishable version (e.g. BP5e). | ||
| scan_environment: | ||
| section: | ||
| m_annotations: | ||
| eln: | ||
| overview: true | ||
| quantities: | ||
| tip_temp: | ||
| type: np.float64 | ||
| m_annotations: | ||
| eln: | ||
| component: NumberEditQuantity | ||
| defaultDisplayUnit: K | ||
| description: | | ||
| Temperature of STM head. Note: At least one field from tip_temp, | ||
| cryo_bottom_temp and cryo_shield_temp must be provided. | ||
| At least one field from tip_temp, cryo_bottom_temp and cryo_shield_temp must be provided. | ||
| cryo_bottom_temp: | ||
| type: np.float64 | ||
| m_annotations: | ||
| eln: | ||
| component: NumberEditQuantity | ||
| defaultDisplayUnit: K | ||
| description: | | ||
| Temperature of the cold tail of the cryostat. Note: | ||
| At least one field from tip_temp, cryo_bottom_temp and cryo_shield_temp must be provided. | ||
| cryo_shield_temp: | ||
| type: np.float64 | ||
| m_annotations: | ||
| eln: | ||
| component: NumberEditQuantity | ||
| defaultDisplayUnit: K | ||
| description: | | ||
| Temperature of liquid nitrogen shield. Note: At | ||
| least one field from tip_temp, cryo_bottom_temp and cryo_shield_temp. | ||
| Sample: | ||
| section: | ||
| m_annotations: | ||
| eln: | ||
| overview: true | ||
| quantities: | ||
| name: | ||
| type: str | ||
| m_annotations: | ||
| eln: | ||
| component: StringEditQuantity | ||
| description: | | ||
| Name of the sample. | ||
| chemical_formula: | ||
| type: str | ||
| m_annotations: | ||
| eln: | ||
| component: StringEditQuantity | ||
| description: | | ||
| The chemical formula specified using CIF conventions. | ||
| Abbreviated version of CIF standard: | ||
| * Only recognized element symbols may be used. | ||
| * Each element symbol is followed by a 'count' number. A count of '1' may be omitted. | ||
| * A space or parenthesis must separate each cluster of (element symbol + count). | ||
| * Where a group of elements is enclosed in parentheses, the multiplier for the | ||
| group must follow the closing parentheses. That is, all element and group | ||
| multipliers are assumed to be printed as subscripted numbers. | ||
| * Unless the elements are ordered in a manner that corresponds to their chemical | ||
| structure, the order of the elements within any group or moiety depends on | ||
| whether or not carbon is present. | ||
| * If carbon is present, the order should be: | ||
| - C, then H, then the other elements in alphabetical order of their symbol. | ||
| - If carbon is not present, the elements are listed purely in alphabetic order of their symbol. | ||
| * This is the *Hill* system used by Chemical Abstracts. | ||
| description: | ||
| type: str | ||
| m_annotations: | ||
| eln: | ||
| component: RichTextEditQuantity | ||
| description: | | ||
| Description of the sample or sample preparation. | ||
| sample_component: | ||
| type: str | ||
| shape: "*" | ||
| m_annotations: | ||
| eln: | ||
| component: StringEditQuantity | ||
| description: | | ||
| The components of the sample comes as a list of components. | ||
| sub_sections: | ||
| History: | ||
| section: | ||
| m_annotations: | ||
| eln: | ||
| overview: true | ||
| quantities: | ||
| notes: | ||
| type: str | ||
| m_annotations: | ||
| eln: | ||
| component: RichTextEditQuantity | ||
| description: | | ||
| Notes about the sample history. |
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