cleaned config files, pre-commit-hooks

.pre-commit-config.yaml

@@ -0,0 +1,68 @@
+exclude: '^docs/conf.py'
+
+repos:
+- repo: https://github.com/pre-commit/pre-commit-hooks
+  rev: v5.0.0
+  hooks:
+  - id: trailing-whitespace
+  - id: check-added-large-files
+  - id: check-ast
+  - id: check-json
+  - id: check-merge-conflict
+  - id: check-xml
+  - id: check-yaml
+  - id: debug-statements
+  - id: end-of-file-fixer
+  - id: requirements-txt-fixer
+  - id: mixed-line-ending
+    args: ['--fix=auto']  # replace 'auto' with 'lf' to enforce Linux/Mac line endings or 'crlf' for Windows
+
+## If you want to automatically "modernize" your Python code:
+# - repo: https://github.com/asottile/pyupgrade
+#   rev: v3.7.0
+#   hooks:
+#   - id: pyupgrade
+#     args: ['--py37-plus']
+
+## If you want to avoid flake8 errors due to unused vars or imports:
+# - repo: https://github.com/PyCQA/autoflake
+#   rev: v2.1.1
+#   hooks:
+#   - id: autoflake
+#     args: [
+#       --in-place,
+#       --remove-all-unused-imports,
+#       --remove-unused-variables,
+#     ]
+
+- repo: https://github.com/PyCQA/isort
+  rev: 5.13.2
+  hooks:
+  - id: isort
+
+- repo: https://github.com/psf/black
+  rev: 24.10.0
+  hooks:
+  - id: black
+    language_version: python3
+
+## If like to embrace black styles even in the docs:
+# - repo: https://github.com/asottile/blacken-docs
+#   rev: v1.13.0
+#   hooks:
+#   - id: blacken-docs
+#     additional_dependencies: [black]
+
+- repo: https://github.com/PyCQA/flake8
+  rev: 7.1.1
+  hooks:
+  - id: flake8
+    additional_dependencies: [Flake8-pyproject]
+  ## You can add flake8 plugins via `additional_dependencies`:
+  #  additional_dependencies: [flake8-bugbear]
+
+## Check for misspells in documentation files:
+# - repo: https://github.com/codespell-project/codespell
+#   rev: v2.2.5
+#   hooks:
+#   - id: codespell

pyproject.toml

@@ -66,3 +66,62 @@ omit = [
     "*/multivariate_poly.py",
     "*/utils_for_test.py",         # Regexes for lines to exclude from consideration
 ]
+
+
+[tool.flake8]
+# Some sane defaults for the code style checker flake8
+max_line_length = 125
+extend_ignore = ["E203", "W503", "E741"]
+# ^  Black-compatible
+#    E203 and W503 have edge cases handled by black
+exclude = [".tox", "build", "dist", ".eggs"]
+
+
+[tool.isort]
+profile = "black"
+known_first_party = ["microagg1d"]
+
+
+[tool.pylint.basic]
+# Good variable names which should always be accepted, separated by a comma.
+good-names = [
+    "R",
+    "D",
+    "T",
+    "D_row",
+    "S",
+    "A",
+    "F",
+    "H",
+    "F_vals",
+    "F_val",
+    "H_vals",
+    "M",
+    "SMALL_VAL",
+    "LARGE_VAL",
+    "MicroaggWilberCalculator_edu",
+    "N_vals",
+    "N",
+    "setUp",
+    "tearDown",
+]
+
+# Good variable names regexes, separated by a comma. If names match any regex,
+# they will always be accepted
+good-names-rgxs = ["^[_a-zGW][_a-z0-9L]?$"]
+
+[tool.pylint.format]
+max-line-length = 225
+
+[tool.pylint."messages control"]
+disable = [
+    "missing-module-docstring",
+    "missing-class-docstring",
+    "missing-function-docstring",
+    "missing-final-newline",
+    "superfluous-parens",
+]
+
+[tool.pylint.main]
+ignore = [".coveragerc"]
+ignore-paths = [".coveragerc|.coveragerc"]

setup.py

@@ -6,6 +6,7 @@
     PyScaffold helps you to put up the scaffold of your new Python project.
     Learn more under: https://pyscaffold.org/
 """
+
 from setuptools import setup
 
 if __name__ == "__main__":