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@FertigLab

FertigLab

Software projects in computational biology and bioinformatics in Elana Fertig's lab in Oncology Biostatistics and Bioinformatics at JHMI

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  1. CoGAPS CoGAPS Public

    Bayesian MCMC matrix factorization algorithm

    C++ 67 17

  2. pycogaps pycogaps Public

    python API to the CoGAPS NMF package

    Python 18 6

  3. CancerInSilico CancerInSilico Public

    An R package for running cell-based models

    C++ 8 1

  4. SingleCellTimeCourse SingleCellTimeCourse Public

    Head and neck cancer rna velocity scripts

    Jupyter Notebook 7 2

  5. scatterHatch scatterHatch Public

    R 7 4

  6. GeneosCollaboration GeneosCollaboration Public

    Repository for R code for single cell sequencing analysis published in Yarchoan, M., Gane, E.J., Marron, T.U. et al. Personalized neoantigen vaccine and pembrolizumab in advanced hepatocellular car…

    R 7 1

Repositories

Showing 10 of 76 repositories
  • CoGAPS Public

    Bayesian MCMC matrix factorization algorithm

    FertigLab/CoGAPS’s past year of commit activity
    C++ 67 BSD-3-Clause 17 23 1 Updated Mar 19, 2025
  • J1798_trial_paper Public

    scripts for the J1798 trial paper

    FertigLab/J1798_trial_paper’s past year of commit activity
    HTML 0 MIT 0 0 0 Updated Mar 19, 2025
  • FertigLab/J15221_trial_paper’s past year of commit activity
    HTML 0 0 0 0 Updated Mar 19, 2025
  • FertigLab/dpt-visium-notebook’s past year of commit activity
    Nextflow 0 0 0 0 Updated Mar 10, 2025
  • onboarding Public
    FertigLab/onboarding’s past year of commit activity
    Ruby 0 MIT 0 0 0 Updated Feb 10, 2025
  • dominoSignal Public Forked from Elisseeff-Lab/domino

    A software package for connecting cell level features in single cell RNA sequencing data with receptor ligand activity.

    FertigLab/dominoSignal’s past year of commit activity
    R 5 GPL-3.0 7 4 (1 issue needs help) 4 Updated Feb 10, 2025
  • bayestme Public Forked from tansey-lab/bayestme

    BayesTME: A reference-free Bayesian method for analyzing spatial transcriptomics data

    FertigLab/bayestme’s past year of commit activity
    Jupyter Notebook 0 4 0 0 Updated Feb 4, 2025
  • FertigLab/fertiglab.github.io’s past year of commit activity
    SCSS 0 1 1 0 Updated Jan 29, 2025
  • FertigLab/spatial-pipeline’s past year of commit activity
    Nextflow 0 0 7 (2 issues need help) 0 Updated Nov 22, 2024
  • HCCTLS Public
    FertigLab/HCCTLS’s past year of commit activity
    R 1 1 0 0 Updated Nov 15, 2024

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