Added inversions and translocations

HaploTypo deal with inversions and translocations.
Just make sure that the position correspondence between chromosomes for complex variants are included in the coordinates table.

Haplotypo initial version

HaploTypo is a pipeline suited to map variants into haplotypes in genetic variation analyses. After mapping and variant calling on a phased reference genome, HaploTypo infers the haplotype correspondence for each heterozygous variant. It also generates two independent FASTA files for each reconstructed haplotype.