-
Notifications
You must be signed in to change notification settings - Fork 21
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
YAML and LinkML auto-formatting and enumeration auto-describing #871
Open
turbomam
wants to merge
8
commits into
main
Choose a base branch
from
standardize-linkml-and-yaml
base: main
Could not load branches
Branch not found: {{ refName }}
Loading
Could not load tags
Nothing to show
Loading
Are you sure you want to change the base?
Some commits from the old base branch may be removed from the timeline,
and old review comments may become outdated.
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Makefile
Outdated
Comment on lines
163
to
175
yq eval '(.. | select(has("from_schema")) | .from_schema) style="" | del(.. | select(has("from_schema")).from_schema)' |\ | ||
yq eval '.classes[] |= select(has("annotations")).annotations |= map_values(.value)' |\ | ||
yq eval '.prefixes |= map_values(.prefix_reference)' |\ | ||
yq eval '.settings |= map_values(.setting_value)' |\ | ||
yq eval '.slots[] |= select(has("annotations")).annotations |= map_values(.value)' |\ | ||
yq eval 'del(.classes.[].name)' |\ | ||
yq eval 'del(.classes.[].slot_usage.[].name)' |\ | ||
yq eval 'del(.enums.[].name)' |\ | ||
yq eval 'del(.enums.[].permissible_values.[].text)' |\ | ||
yq eval 'del(.slots.[].domain)' |\ | ||
yq eval 'del(.slots.[].name)' |\ | ||
yq eval 'del(.source_file)' |\ | ||
yq eval 'del(.subsets.[].name)' |\ |
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
These yq
clean up/tidying steps are great!! 🧹
This was referenced Oct 14, 2024
turbomam
changed the title
formatting changes only
YAML and LinkML auto-formatting and enumeration auto-naming
Oct 14, 2024
turbomam
changed the title
YAML and LinkML auto-formatting and enumeration auto-naming
YAML and LinkML auto-formatting and enumeration auto-describing
Oct 14, 2024
sujaypatil96
approved these changes
Oct 15, 2024
@turbomam to split it out into 2 PRs. |
More autoformatting the better! Does this then occur/get applied during GitHub actions validation? |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
This PR adds a mechanism for
prefixes
text
of permissible valuesIt also inherits auto-describing of any enum that lacks a description from
For future discussion:
-what technology should we use to check that?