STY: pre-commit linting with ruff

HuttleyLab · Nov 8, 2024 · 6f249d4 · 6f249d4
1 parent 87b87ce
commit 6f249d4
Show file tree

Hide file tree

Showing 2 changed files with 4 additions and 3 deletions.
diff --git a/src/diverse_seq/cli.py b/src/diverse_seq/cli.py
@@ -7,7 +7,6 @@
 
 import click
 import rich.progress as rich_progress
-from cogent3 import make_unaligned_seqs
 from cogent3.app import data_store as c3_data_store
 from scitrack import CachingLogger
 

diff --git a/src/diverse_seq/cluster.py b/src/diverse_seq/cluster.py
@@ -242,7 +242,6 @@ def make_cluster_tree(
     return tree
 
 
-
 class DvsParCtreeMixin:
     def _mash_dist(self, seq_arrays: Sequence[SeqArray]) -> numpy.ndarray:
         """Calculates pairwise mash distances between sequences in parallel.
@@ -624,7 +623,10 @@ def main(self, seq_names: list[str]) -> PhyloNode:
         seq_arrays = seq_arrays[: self._limit] if self._limit else seq_arrays
         seq_arrays = [
             SeqArray(
-                member.unique_id, member.read(), self._moltype, member.data_store.source
+                member.unique_id,
+                member.read(),
+                self._moltype,
+                member.data_store.source,
             )
             for member in seq_arrays
         ]