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Merge pull request #31 from GavinHuttley/main
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DOC: overview statement
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GavinHuttley authored Aug 25, 2024
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# Divergent
# Divergent identifies the most divergent biological sequences from a collection

## Identifying the sequences that maximise Jensen-Shannon
`divergent` provides tools for selecting a representative subset of sequences from a larger collection. It is an alignment-free method which scales linearly with the number of sequences. It identifies the subset of divergent sequences that maximize the information theoretic measure Jensen-Shannon divergence. Divergent provides a command-line interface and plugins to the Cogent3 app system allowing users to embed code in their own scripts. The command-line tools can be run in parallel.

## The available commands

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