Merge pull request #48 from GavinHuttley/main

MAINT: address deprecation
HuttleyLab · Sep 6, 2024 · c0a1ead · c0a1ead
2 parents 20b0341 + 47bbd9d
commit c0a1ead
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Showing 2 changed files with 3 additions and 3 deletions.
diff --git a/pyproject.toml b/pyproject.toml
@@ -48,7 +48,7 @@ test = [
     "pytest",
     "pytest-cov",
     "pytest-xdist",
-    "ruff==0.6.2",
+    "ruff==0.6.3",
 ]
 dev = [
     "cogapp",
@@ -58,7 +58,7 @@ dev = [
     "pytest",
     "pytest-cov",
     "pytest-xdist",
-    "ruff==0.6.2",
+    "ruff==0.6.3",
 ]
 doc  = ["click",
         "ipykernel",

diff --git a/tests/test_record.py b/tests/test_record.py
@@ -439,7 +439,7 @@ def test_make_kmerseq(new_seq):
     seq = make_seq(seq=raw, name=name, moltype="dna", new_type=new_seq)
     seq.info.source = "source1"
     kseq = make_kmerseq(seq, dtype=dtype, k=2, moltype="dna")
-    alpha = get_moltype("dna", new_type=True).alphabet.get_word_alphabet(2)
+    alpha = get_moltype("dna", new_type=True).alphabet.get_kmer_alphabet(2)
     expect_kmers = alpha.to_indices(raw, independent_kmer=False)
     expect = zeros(len(alpha), dtype=dtype)
     expect[expect_kmers] = 1