Prepare release v0.1.2 (#72)

* Fixed birthday joke (#63)

* fixed Birthday Joke

* fixed Birthday Joke

* Easy testing for user (#64)

* fixed Birthday Joke

* automatic upload of test data upon button click

* added aesthethics to Landing Page

* Update program/shinyApp/R/data_selection/ui.R

Co-authored-by: Paul Jonas Jost <70631928+PaulJonasJost@users.noreply.github.com>

* adjust aesthetics

Co-authored-by: Paul Jonas Jost <70631928+PaulJonasJost@users.noreply.github.com>

* release v0.1.1 (#58)

* aesthetic change to identify current tab by colour (#52)

* Add another loading visualisation across PC's (#51)

* add loading matrix plot

* add variable naming of y axis, plus fix reactive behaviour

* add a TODO

* Absolute LFC as default option in EA (#57)

* Added option for absolute logfold changes and set it as default.

* Set the adjustment method to BH for less strict adjustment.

* Complete ea choice (#55)

* added the pageLength option as well as filters to the datatable.

* removed pagelength slider as there is a button already

* Added many more geneset choices. To be done: remove go choices, add more options for e.g. adjustment method.

* Rework DataTable in EA (#53)

* added the pageLength option as well as filters to the datatable.

* removed pagelength slider as there is a button already

* Fix oa translation (#59)

* Added translation method in case of OA

* Added the additional sets for analysis and corrected translation.

* Fixed names of oa gene list.

* Fixed various bugs, Now provided gene set and heamap gene list should work. New Problem: Error when nothing significant is found. Needs to be changed.

* Fixed Kegg error in display due to misspelling.

* Added a text output in case no significant results were found.

* For now turned of `heatmap to ea`button

* For now removed `heatmap to ea`button. Probably obsolete even in the future.

* updated showing of error message

* removed superfluous go choice

* also hide helper text for notes in case the enrichment is not done or fails.

* deactivated heatmap genes till further fix.

* Merge main into develop (#65)

* Fixed birthday joke (#63)

* fixed Birthday Joke

* fixed Birthday Joke

* Easy testing for user (#64)

* fixed Birthday Joke

* automatic upload of test data upon button click

* added aesthethics to Landing Page

* Update program/shinyApp/R/data_selection/ui.R

Co-authored-by: Paul Jonas Jost <70631928+PaulJonasJost@users.noreply.github.com>

* adjust aesthetics

Co-authored-by: Paul Jonas Jost <70631928+PaulJonasJost@users.noreply.github.com>

Co-authored-by: Lea Seep <74967328+LeaSeep@users.noreply.github.com>

* fixed comma error. (#66)

Co-authored-by: Lea Seep <74967328+LeaSeep@users.noreply.github.com>

* CHANGELOG for update

Co-authored-by: Lea Seep <74967328+LeaSeep@users.noreply.github.com>

CHANGELOG.md

@@ -6,6 +6,12 @@ Release notes
 ..........
 
 
+0.1.2 (2022-11-23)
+-------------------
+* General:
+    * Fixes for server (#71)
+
+
 0.1.1 (2022-11-23)
 -------------------
 * General:

program/shinyApp/R/pca/server.R

@@ -526,7 +526,7 @@ pca_Server <- function(id, omic_type, row_select){
         entitiesToInclude <- apply(df_loadings_filtered, 1, any)
 
         df_loadings <- df_loadings[entitiesToInclude,] %>%
-          tidyr::gather(key = "PC", value = "loading", -entity)
+          gather(key = "PC", value = "loading", -entity)
 
         global_max <- max(df_loadings$loading)
         global_min <- -global_max