add simplified MPRAGE model #18
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| name: CI-CD | |
| on: | |
| push: | |
| branches: [ "main" ] | |
| pull_request: | |
| branches: [ "main" ] | |
| jobs: | |
| test: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: [3.11, 3.12] # Specify the desired Python versions | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| pip install .[test] | |
| - name: Run tests | |
| run: pytest --cov --cov-report=xml tests | |
| - name: Upload coverage reports to Codecov | |
| uses: codecov/codecov-action@v4.0.1 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| slug: INFN-MRI/torchsim | |
| docs: | |
| runs-on: ubuntu-20.04 | |
| needs: test | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.10" | |
| - name: Restore cached IXI directory | |
| uses: actions/cache/restore@v4 | |
| id: cache-restore | |
| with: | |
| path: ~/.ixi | |
| key: ${{ runner.os }}-ixi | |
| - name: Install dependencies | |
| shell: bash -l {0} | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install .[doc] | |
| python -m pip install -r docs/requirements.txt | |
| - name: Build API documentation | |
| run: | | |
| python -m sphinx docs docs_build | |
| - name: Display structure of docs | |
| run: ls -R docs_build/ | |
| - name: Cache IXI directory | |
| uses: actions/cache/save@v4 | |
| if: ${{ steps.cache-restore.outputs.cache-hit != 'true' }} | |
| with: | |
| path: ~/.ixi | |
| key: ${{ runner.os }}-ixi | |
| - name: Deploy to GitHub Pages | |
| uses: peaceiris/actions-gh-pages@v4 | |
| with: | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| publish_dir: ./docs_build | |
| destination_dir: . # Ensure you deploy to the root of the gh-pages branch | |
| publish_branch: gh-pages | |
| keep_files: false | |