🔖initial commit (#1)

* add readme, visual, license, etc.

Co-authored-by: Bryn Lloyd <lloyd@itis.swiss>

.github/ISSUE_TEMPLATE/bug_report.yml

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+name: Bug Report
+description: File a bug report
+title: "[Bug]: "
+labels: ["bug", "triage"]
+assignees:
+  - dyollb
+body:
+  - type: markdown
+    attributes:
+      value: |
+        Thanks for taking the time to fill out this bug report!
+  - type: input
+    id: contact
+    attributes:
+      label: Contact Details
+      description: How can we get in touch with you if we need more info?
+      placeholder: ex. email@example.com
+    validations:
+      required: false
+  - type: textarea
+    id: what-happened
+    attributes:
+      label: What happened?
+      description: Also tell us, what did you expect to happen?
+      placeholder: Tell us what you see!
+      value: "A bug happened!"
+    validations:
+      required: true
+  - type: dropdown
+    id: version
+    attributes:
+      label: Version
+      description: What version of our data are you using?
+      options:
+        - 1.0.0 (Default)
+    validations:
+      required: true
+  - type: dropdown
+    id: software
+    attributes:
+      label: What software are you seeing the problem in?
+      multiple: true
+      options:
+        - Sim4Life
+        - iSEG
+        - Slicer 3D
+        - SimNIBS
+        - Other
+  - type: textarea
+    id: other
+    attributes:
+      label: Other software
+      description: If you specified other software above, please specify which software you are using.
+      value: "software name and version"
+  - type: checkboxes
+    id: terms
+    attributes:
+      label: Code of Conduct
+      description: By submitting this issue, you agree to follow our [Code of Conduct](https://example.com)
+      options:
+        - label: I agree to follow this project's Code of Conduct
+          required: true

.github/ISSUE_TEMPLATE/new_issue.md

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+---
+name: Tracking issue
+about: Use this template for tracking new features.
+title: '[DATE]: [FEATURE NAME]'
+labels: tracking issue, needs triage
+assignees: dyollb
+---
+
+# Title
+
+## SubTitle
+
+### SubSubTitle

.pre-commit-config.yaml

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+default_language_version:
+  python: python3
+
+ci:
+  autofix_prs: true
+  autoupdate_commit_msg: '[pre-commit.ci] pre-commit suggestions'
+  autoupdate_schedule: quarterly
+
+repos:
+  - repo: https://github.com/pre-commit/pre-commit-hooks
+    rev: v4.3.0
+    hooks:
+      - id: end-of-file-fixer
+      - id: trailing-whitespace
+      - id: check-added-large-files
+        args: ['--maxkb=1024']
+
+  - repo: https://github.com/executablebooks/mdformat
+    rev: 0.7.14
+    hooks:
+      - id: mdformat
+        name: format markdown
+        additional_dependencies:
+          - mdformat-gfm
+          - mdformat_frontmatter
+        exclude: CHANGELOG.md

CITATION.cff

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+cff-version: 1.2.0
+message: If you use this data, please cite it using these metadata.
+title: IXI025 - IT'IS Template Head Segmentation Repository
+abstract: The IXI025 head model is based on the IXI dataset (subject 025) and includes a whole head segmentation, surface-based model, anatomical images, diffusion weighted images, and fiducials for 10-10 system.
+authors:
+  - family-names: Farcito
+    given-names: Silvia
+    orcid: "https://orcid.org/0000-0003-0756-192X"
+  - family-names: Lloyd
+    given-names: Bryn
+    orcid: "https://orcid.org/0000-0003-0935-9530"
+version: 1.2.2
+date-released: "2022-11-16"
+identifiers:
+  - description: This is the archived snapshot of version 1.0.0 of IXI025
+    type: doi
+    value: "10.5281/zenodo.6563519"
+license: CC BY-SA 3.0 license
+repository-code: "https://github.com/ITISFoundation/IXI025"

CODE_OF_CONDUCT.md

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+# Contributor Covenant Code of Conduct
+
+## Our Pledge
+
+In the interest of fostering an open and welcoming environment, we as
+contributors and maintainers pledge to making participation in our project and
+our community a harassment-free experience for everyone, regardless of age, body
+size, disability, ethnicity, sex characteristics, gender identity and expression,
+level of experience, education, socio-economic status, nationality, personal
+appearance, race, religion, or sexual identity and orientation.
+
+## Our Standards
+
+Examples of behavior that contributes to creating a positive environment
+include:
+
+- Using welcoming and inclusive language
+- Being respectful of differing viewpoints and experiences
+- Gracefully accepting constructive criticism
+- Focusing on what is best for the community
+- Showing empathy towards other community members
+
+Examples of unacceptable behavior by participants include:
+
+- The use of sexualized language or imagery and unwelcome sexual attention or
+  advances
+- Trolling, insulting/derogatory comments, and personal or political attacks
+- Public or private harassment
+- Publishing others' private information, such as a physical or electronic
+  address, without explicit permission
+- Other conduct which could reasonably be considered inappropriate in a
+  professional setting
+
+## Our Responsibilities
+
+Project maintainers are responsible for clarifying the standards of acceptable
+behavior and are expected to take appropriate and fair corrective action in
+response to any instances of unacceptable behavior.
+
+Project maintainers have the right and responsibility to remove, edit, or
+reject comments, commits, code, wiki edits, issues, and other contributions
+that are not aligned to this Code of Conduct, or to ban temporarily or
+permanently any contributor for other behaviors that they deem inappropriate,
+threatening, offensive, or harmful.
+
+## Scope
+
+This Code of Conduct applies both within project spaces and in public spaces
+when an individual is representing the project or its community. Examples of
+representing a project or community include using an official project e-mail
+address, posting via an official social media account, or acting as an appointed
+representative at an online or offline event. Representation of a project may be
+further defined and clarified by project maintainers.
+
+## Enforcement
+
+Instances of abusive, harassing, or otherwise unacceptable behavior may be
+reported by contacting the project team at virtualpopulation@itis.swiss. All
+complaints will be reviewed and investigated and will result in a response that
+is deemed necessary and appropriate to the circumstances. The project team is
+obligated to maintain confidentiality with regard to the reporter of an incident.
+Further details of specific enforcement policies may be posted separately.
+
+Project maintainers who do not follow or enforce the Code of Conduct in good
+faith may face temporary or permanent repercussions as determined by other
+members of the project's leadership.
+
+## Attribution
+
+This Code of Conduct is adapted from the [Contributor Covenant][homepage], version 1.4,
+available at https://www.contributor-covenant.org/version/1/4/code-of-conduct.html
+
+For answers to common questions about this code of conduct, see
+https://www.contributor-covenant.org/faq
+
+[homepage]: https://www.contributor-covenant.org

IXI025-Guys-0852-SEG.txt

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+V7
+N15
+C0.745098 0.611765 0.470588 1.000000 Skin
+C0.929412 0.839216 0.584314 1.000000 Bone_cortical
+C0.470588 0.521569 0.850980 1.000000 Cerebrospinal_fluid
+C0.000000 0.000000 0.000000 1.000000 Air_internal
+C0.901961 0.737255 0.258824 1.000000 Eyes
+C0.498039 0.498039 0.498039 1.000000 Cerebrum_grey_matter
+C0.894118 0.894118 0.894118 1.000000 Cerebrum_white_matter
+C0.984314 0.976471 0.211765 0.500000 Other_tissues
+C0.000000 0.752941 0.478431 0.500000 Visual_Nerve
+C0.741176 0.184314 0.286275 0.500000 Rectus_muscle
+C0.000000 0.729412 0.658824 0.500000 Spinal_cord
+C1.000000 0.631373 0.737255 0.500000 Mucosa
+C0.000000 0.325490 1.000000 0.500000 Vein
+C0.800000 0.000000 0.000000 0.500000 Artery
+C0.929412 0.776471 0.603922 0.500000 Bone_cancellous