chore(deps): update dependency ketcher-standalone to v2.27.0

[renovate]

This PR contains the following updates:

Package	Change	Age	Adoption	Passing	Confidence
ketcher-standalone (source)	2.25.0 -> 2.27.0

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Release Notes

epam/ketcher (ketcher-standalone)

v2.27.0: Ketcher v2.27.0 January 13, 2025

Compare Source

What's Changed

This release includes several bug fixes and new features. Please be aware Ketcher 2.27.0 has been tested with Indigo version 1.26.0 (standalone and remote).

New features

• #​5354 – Apply new hash spacing setting to canvas
• #​5579 – Introduce Hand tool for macromolecules mode
• #​5590 – Zoom in macromolecules mode should be in relation to the top left corner of the structures
• #​5403 – Introduce hydrogen bonds in macromolecules mode
• #​5600 – Zoom in automatically upon import of small sequences
• #​5637 – Display hydrogen in atom label for molecules in macromolecules mode
• #​5556 – Allow import and export of sequences with three letter amino acid codes
• #​5640 – Multiple monomers expansion in micro molecules mode
• #​5187 – Introduce new amino-acid colors
• #​6174 – Update indigo to 1.26.0 in browser module

Bugfixes and improvements

• #​5370 – System should remember the canvas mode on Molecules/Macromolecules mode switch (do not switch to Sequernce by default)
• #​5372 – Toggling between Flex and Sequence modes causes loosing layout info
• #​5564 – Search of ambiguous monomers doesn't work
• #​4475 – Numbers on top of letters are not centered
• #​4936 – Applying Enhanced Stereochemistry to monomers causes its disappear from the canvas (and exception in console)
• #​4941 – System shows Edit S-Group option for every bond of molecule if it has attachment point
• #​5181 – getKet duplicates items when macro molecules are use
• #​5398 – Elliptic arrow icons order is wrong at arrow toolbar
• #​5935 – Unable to establish hydrogen bond connection if monomer has no free attachment points
• #​5941 – Hydrogen bonds remain in place on monomer delete
• #​5940 – Copy/paste operation works wrong (copy only two hydrogen bonds and drops others)
• #​5933 – Error message is wrong if user tries to establish hydrogen bond if it is already exist
• #​5967 – System should not change monomer position after switching from Molecules to Macromolecules - Sequence
• #​5972 – Export to three letter amino acid codes cause convert error
• #​5969 – Load from file having only micro structures on macro canvas causes unnecessary zoom up to 200% and shift molecule to top left angle
• #​5970 – Unable to connect monomer to molecule in snake mode
• #​5949 – Delete of micro molecules bonds works wrong (or doesn't work)
• #​5910 – Fix closest sgroup detection to allow focusing on entities within expanded monomer's bounding box

v2.26.0: Ketcher v2.26.0 November 20, 2024

Compare Source

What's Changed

This release includes several bug fixes and new features. Please be aware Ketcher 2.26.0 has been tested with Indigo version 1.25.0 (standalone and remote).

New features

• #​5400 – Expand macromolecules in micro mode
• #​5359 – Display molecules in macro mode: basic structures with atoms and bonds
• #​5325 – Change natural analogue of monomers
• #​5324 – Change symbols of monomers
• #​5323 – Change names of monomers
• #​5195 – Some content problems in monomer library
• #​5111 – Change structure of monomers
• #​4984 – Highlight atoms and bonds
• #​4965 – View only mode
• #​4986 – Ctrl+move copy
• #​1838 – Create custom top toolbar buttons
• #​5156 – Add new option in settings acs style
• #​5154 – Change "Double bond width" setting
• #​5175 – Allow entering values in settings with the precision of one decimal place
• #​4982 – Choose both directions of wedged/hashed bonds from right-clicking the bond
• #​5435 – Change bond length for ACS styles settings
• #​5351 – Change the default size of a plus and the arrows
• #​5945 – Update indigo to 1.25.0 in browser module

Bugfixes and improvements

• #​5430 – Fix ESLint error in selectClearCanvasTool function
• #​4983 – Settings for the "attachment point tool" don't update with changed pixel settings
• #​4757 – Incorrect stereo-label placement for (E) and (Z)
• #​5536 – White screen is displayed after change direction of wedge bond
• #​5296 – Save Support for RDF Format
• #​5615 – Overlapping UI elements in Query Properties right-click menu
• #​4394 – In the Sequence mode, the tooltip “Start new sequence” is shown outside of the canvas
• #​5651 – The reaction can't save to MDL RXN V3000 (returns RXN V2000 instead)
• #​5597 – New rendering for highlight
• #​5561 – Set a new name for the button acs style
• #​5672 – Multiple duplicate items
• #​5205 – Edit Connection points dialog can cause invalid connection between monomers
• #​5709 – Unable to load variant sugar from HELM - system throws an error: Convert error! {}
• #​5710 – Unable to load variant phosphate from HELM - system throws an error: Convert error! {}
• #​5711 – Unable to load variant CHEM from HELM - system throws an error: Convert error! {}
• #​5621 – O and U sumbols are not supported in sequence mode
• #​5612 – The file size is the same when saved to png
• #​5634 – ketcher.getMolfile() stopped working for macro canvas with peptides
• #​5649 – Default values for bond settings (at least for bond) got corrupted and become wrong after ver 2.26 version installed
• #​4316 – In the Sequence and Flex mode the nucleotide preview is closely adjacent to the left edge of the screen
• #​5557 – Bond/monomer tooltip preview placed wrong in on edge cases
• #​5097 – Selection frame is displayed improperly for overlapped images
• #​5148 – Image changes the layer to top after scaling actions
• #​5581 – If switch to View Only Mode with Fragment Selection you cannot change or select another selection mode
• #​5657 – Clear canvas doesn't work for micro structures on macro mode
• #​5679 – Unable to establish connection between micro structure and macro ones
• #​5401 – Side-chain connections are not displayed in Snake mode
• #​5662 – Fix inability to select Erase tool after monomer expansion
• #​5612 – The file size is the same when saved to png
• #​5686 – Bonds between micro and macro structures couldn't be selected and deleted
• #​5659 – Moving of selected microstructures on macro canvas works wrong
• #​5665 – Show remove abbreviation dialog when trying to erase expanded monomer
• #​5725 – Cursor position is incorrect when editing sequence in Macro mode
• #​5800 – Application crashes with white screen in Macro mode when loading local storage data from a previous version
• #​5758 – Highlight only bonds when selected bonds + atoms
• #​5703 – Added tooltip for image resolution option
• #​5673 – Micro structures connected to polymer chains are not shown on Sequence mode canvas
• #​5650 – The reaction with catalysts is displayed incorrect with ACS style setting and after layout
• #​5761 – Fix minimal distances for mult-tail validation in KET format
• #​5413 – Can't add specific SVG image to Canvas in Mozilla Firefox
• #​5434 – Document creation and behaviour of custom buttons
• #​5776 – Add API Method getRdf for retrieving RDF representation of structures
• #​5786 – Uncaught TypeError is in console when trying to move tail of Multi-Tailed Arrow added from KET with small size between tails
• #​5753 – Issue with moving of tail of Multi-Tailed arrow with several tails when user needs to move the tail close to another one
• #​5679 – Unable to establish connection between micro structure and macro ones
• #​5848 – Unable to establish connection between micro structure and sugar or phosphate (and partially - unresolved monomer)
• #​5703 – The picture is incorrect when image resolution high and bond thickness changing
• #​5685 – The diagonal bond in the molecule is displayed incorrect with ACS style
• #​5674 – Inconsistent behavior of copy-paste and cut-paste operations with macromolecule abbreviations
• #​5658 – Incorrect selection behavior when using Selection tool on Macromolecule abbreviations
• #​5699 – After bulk deletion of monomer abbreviations, Undo returns expanded monomers
• #​5836 – R-Group fragment labels font size doesn't defined by Sub Font size property at Settings
• #​5834 – S-Group (Data type) Field value label font size uses Settings - Font size property value instead of Sub font size one
• #​5833 – Importing functional groups (e.g. Boc, Bn, CF3) ignores drawing settings (e.g. ACS style)
• #​5809 – System opens wrong context menu for monomers on micro canvas if clicked on atom or bond
• #​5887 – After save and load a MOL V3000 file in macro and micro mode, bond connections are changed, and the microstructures are shifted
• #​5814 – On Remote environment, the reaction/molecule can't be saved to V3000 formats (returns V2000 instead): MOL, RXN, SDF, RDF
• #​5886 – Loading a KET file in macro mode, bond connections are preserved but microstructures are shifted

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