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JD2112 committed Mar 17, 2022
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Image acquisition from live cell image instrument (IncuCyte®) and processed in MATLAB to acquire desired frames and export into a video format.
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Reuired files
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1. Sequential images from the IncuCyte® should be in the local folder

Run the code
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::

1. open the code file (mcode.m) in MATLAB
2. Run it in MATLAB console
3. The code will prompt to select the folder (where you saved the images)
4. DONE!

Movie 1 🎬
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Video with MATLAB processing inset only |Watch the Video|

.. |Watch the Video| image:: vertopal_3138ad45283a40f6ba8e003fc947aa77/2f3d4ba425f6944ae001f61bda86485609c8a76e.jpg
:target: https://youtu.be/pOvcgVS5NNs

Movie 2 🎬
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Video with insets of MATLAB processing and Growth Curves |Wathc the
Video|

.. |Wathc the Video| image:: vertopal_3138ad45283a40f6ba8e003fc947aa77/2daa35ea5d93fa957772d211882f9f3fc5531f89.jpg
:target: https://youtu.be/bpEqelEDgXk

Citation:
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\**Kalsum, S., Andersson, B., Das, J. et al. A high-throughput screening
assay based on automated microscopy for monitoring antibiotic
susceptibility of *Mycobacterium tuberculosis* phenotypes. BMC Microbiol
21, 167 (2021). Find full article
`here <https://doi.org/10.1186/s12866-021-02212-3>`__



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