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JingQiChong/README.md

πŸ‘‹ Hello, welcome to my world!πŸ‘‹

My name is Jing Qi and I am a research assistant in Prof Albert Tenesa's lab at the Roslin Institute. Currently, I am working with Dr Pau Navarro to develop the first high-density DNA methylation array for cattle using a self-designed bioinformatics workflow.

I am interested in understanding the molecular background of diseases in humans and livestock, utlising multi-omics and machine learning approaches. Moreover, my bioinformatician alter ego enjoys developing tools and reproducible workflows for data analysis.

I graduated from the University of Edinburgh with a degree in BSc (Hons) Biological Sciences (Genetics). I learned and gained experience in bioinformatics by participating in various projects during my undergraduate life. In the summer of 2021, I did a two month placement with Prof James Prendergast, in which I examined a Boran genome to determine the potential causal variant that confers tolerance to East Coast Fever. During my final (honours) year, I chose a bioinformatics-orientated project in The Wallace Lab, under the supervision of Dr Edward Wallace and Dr Sam Haynes. My honours project was about studying the RNA-protein interaction in Saccharomyces cerevisiae, focusing on Khd1. I also developed an improved version of bioinformatics workflow to analyse the interaction between RNA and protein.

About my honours project work:

You can also find me on:

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  1. nf_CRACpipeline nf_CRACpipeline Public

    A Nextflow workflow for processing and analyzing CRAC data

    Nextflow 1 1

  2. jingqichong jingqichong Public

    Config files for my GitHub profile

    1

  3. Khd1_CRAC_analysis Khd1_CRAC_analysis Public

    Analysis on the CRAC sequencing data of yeast RNA binding protein Khd1/Hek2

    HTML 1 1

  4. Pbp2_CRAC_analysis Pbp2_CRAC_analysis Public

    Analysis on the CRAC sequencing data of yeast RNA binding protein Pbp2/Hek1

    HTML 1