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Koeng101 committed Aug 27, 2024
1 parent f36d2cd commit 89b1b03
Showing 1 changed file with 4 additions and 1 deletion.
5 changes: 4 additions & 1 deletion lib/synthesis/fragment/fragment.go
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Expand Up @@ -239,7 +239,10 @@ type Assembly struct {
// For example: []int{5,4,4,5} is a very reasonable standard if you have
// oligos with a 1/2000 mutation rate that are approximately 174bp - you
// would assemble ~870bp fragments, which should have a 64.72% success rate,
// or a ~95% success rate over 3 colonies.
// or a ~95% success rate over 3 colonies. Assembly pattern is also just a
// rough... recommendation. Often times the lowest level of oligo has +1 in
// order to fit the right overhangs in. This doesn't matter that much because
// the limiting factor in assemblies is typically mutation rate at that size.
func RecursiveFragment(sequence string, maxCodingSizeOligo int, assemblyPattern []int, excludeOverhangs []string, includeOverhangs []string) (Assembly, error) {
/*
Ok, so this is a note for you hackers out there: this algorithm can be
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