Short programm to build a KEGG reference for metagenomes from BRITE hierarchies; Intended for GhostKOALA (https://www.kegg.jp/ghostkoala/) output but works with any KO dataset. Across metabolic pathways, a single KEGG orthologue may have more than one function - which creates issues in assigning genes a precise function if multiple entries are availabe. This R-programm produces a neat table from hierachical h-text files available from KEGG (https://www.kegg.jp/brite/ko00001). Non-unique KO function levels are determined by last common function, KNrs, gene names etc are unaffected.
-
Notifications
You must be signed in to change notification settings - Fork 0
LeonDlugosch/KEGG-Reference-builder
Folders and files
| Name | Name | Last commit message | Last commit date | |
|---|---|---|---|---|
Repository files navigation
About
Short programm to build a KEGG reference for metagenomes from BRITE hierarchies; Intended for GhostKOALA output but works with any KO dataset
Resources
Stars
Watchers
Forks
Releases
No releases published
Packages 0
No packages published