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Merge pull request #71 from MPI-Dortmund/add-link-2
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add links to strategies
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thorstenwagner authored Nov 3, 2023
2 parents 20b9dc0 + c69614d commit 29e994b
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8 changes: 7 additions & 1 deletion docs/tutorials/tut01_reference.rst
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Expand Up @@ -117,7 +117,7 @@ Below the table, you need to adjust the :guilabel:`metric min` and :guilabel:`si
.. image:: ../img/tutorial_1/after_optim.png
:width: 650

In the left panel, select the references you would like to pick (ctrl click on windows, cmd click on mac to select multiple). You can now press :guilabel:`File` -> :guilabel:`Save selected Layer(s)`. In the dialog, change the :guilabel:`Files of type` to :guilabel:`Box Manager`. Choose filename like :guilabel:`selected_coords.tloc`. Make sure that the file ending is :file:`.tloc`.
In the left panel, select the references you would like to pick (:kbd:`Control` + :kbd:`LMB` on linux/windows, :kbd:`CMD` + :kbd:`LMB` on mac to select multiple). You can now press :guilabel:`File` -> :guilabel:`Save selected Layer(s)`. In the dialog, change the :guilabel:`Files of type` to :guilabel:`Box Manager`. Choose filename like :guilabel:`selected_coords.tloc`. Make sure that the file ending is :file:`.tloc`.

To convert the :file:`.tloc` file into :file:`.coords` you need to run

Expand All @@ -127,6 +127,12 @@ To convert the :file:`.tloc` file into :file:`.coords` you need to run

You will find coordinate file for each reference in :file:`.coords` format in the :file:`coords/` folder.

.. hint:: **Strategy: Improve your picks by refining your references**

Manual selected references can sometimes be optimized using umaps!

Check out the :ref:`corresponding strategy <strategy-01>`!

8. Scale your coordinates
^^^^^^^^^^^^^^^^^^^^^^^^^

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10 changes: 9 additions & 1 deletion docs/tutorials/tut02_cluster.rst
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Expand Up @@ -82,6 +82,8 @@ You can use the |mag| icon to change the displayed area/zoom and the :guilabel:`
:width: 650
:align: center



6. Save target clusters
^^^^^^^^^^^^^^^^^^^^^^^^

Expand Down Expand Up @@ -120,7 +122,13 @@ Below the table, you need to adjust the :guilabel:`metric min` and :guilabel:`si
.. image:: ../img/tutorial_1/after_optim.png
:width: 650

In the left panel, select the references you would like to pick (ctrl click on windows, cmd click on mac to select multiple). You can now press :guilabel:`File` -> :guilabel:`Save selected Layer(s)`. In the dialog, change the :guilabel:`Files of type` to :guilabel:`Box Manager`. Choose filename like :guilabel:`selected_coords.tloc`. Make sure that the file ending is :file:`.tloc`.
In the left panel, select the references you would like to pick (:kbd:`Control` + :kbd:`LMB` on linux/windows, :kbd:`CMD` + :kbd:`LMB` on mac to select multiple). You can now press :guilabel:`File` -> :guilabel:`Save selected Layer(s)`. In the dialog, change the :guilabel:`Files of type` to :guilabel:`Box Manager`. Choose filename like :guilabel:`selected_coords.tloc`. Make sure that the file ending is :file:`.tloc`.

.. hint:: **Strategy: Improve your picks by refining your cluster targets**

Cluster targets can sometimes be optimized using umaps!

Check out the :ref:`corresponding strategy <strategy-01>`!

To convert the :file:`.tloc` file into :file:`.coords` you need to run

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