update tutorial

MPI-Dortmund · Mar 26, 2024 · 4225f5b · 4225f5b
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diff --git a/docs/img/tutorial_2/find_cluster_targets_overview.odg b/docs/img/tutorial_2/find_cluster_targets_overview.odg
diff --git a/docs/tutorials/text_modules/downscale/first_paragraph.rst b/docs/tutorials/text_modules/downscale/first_paragraph.rst
@@ -1,4 +1,4 @@
-TomoTwin was trained on tomograms with a pixelsize of 10Å. While in practice we've used it with pixel sizes ranging from 9.2Å to 25.0Å, it is probably ideal to run it at a pixel size close to 10Å.  For that you may need to downscale your tomogram. You can do that by fourier shrink your tomogram with EMAN2. Lets say you have a Tomogram with a pixelsize of 5.9359Å. The fouriershrink factor is then 10Å/5.9359Å = 1.684
+TomoTwin has been trained on tomograms with a pixel size of 10Å. While in practice we've used it with pixel sizes ranging from 9.2Å to 25.0Å, it's probably often ideal to run it with a pixel size close to 10Å. However, for proteins equal to or larger than the ribosome, we have found that a larger pixel size (e.g. 15Å) works better.  For this you may need to rescale your tomogram. You can do this by Fourier shrinking your tomogram with EMAN2. Suppose you have a tomogram with a pixel size of 5.9359Å. The Fourier shrink factor is then 10Å/5.9359Å = 1.684
 
 
 

diff --git a/docs/tutorials/tut01_reference.rst b/docs/tutorials/tut01_reference.rst
@@ -14,7 +14,7 @@ In this tutorial we describe how to use TomoTwin for picking in tomograms using
     Download: `https <https://ftp.gwdg.de/pub/misc/sphire/TomoTwin/data/reference_picking/example_reference_picking.tar.gz>`_
 
 
-1. Downscale your Tomogram to 10 Å
+1. Rescale your Tomogram
 ----------------------------------
 
 .. include:: text_modules/downscale_reference.rst

diff --git a/docs/tutorials/tut02_cluster.rst b/docs/tutorials/tut02_cluster.rst
@@ -4,7 +4,7 @@ Tutorial 2: Clustering based particle picking
 
 
 
-1. Downscale your Tomogram to 10 Å
+1. Rescale your Tomogram
 ---------------------------------
 
 .. include:: text_modules/downscale_clustering.rst
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		@@ -1,4 +1,4 @@
		TomoTwin was trained on tomograms with a pixelsize of 10Å. While in practice we've used it with pixel sizes ranging from 9.2Å to 25.0Å, it is probably ideal to run it at a pixel size close to 10Å. For that you may need to downscale your tomogram. You can do that by fourier shrink your tomogram with EMAN2. Lets say you have a Tomogram with a pixelsize of 5.9359Å. The fouriershrink factor is then 10Å/5.9359Å = 1.684
		TomoTwin has been trained on tomograms with a pixel size of 10Å. While in practice we've used it with pixel sizes ranging from 9.2Å to 25.0Å, it's probably often ideal to run it with a pixel size close to 10Å. However, for proteins equal to or larger than the ribosome, we have found that a larger pixel size (e.g. 15Å) works better. For this you may need to rescale your tomogram. You can do this by Fourier shrinking your tomogram with EMAN2. Suppose you have a tomogram with a pixel size of 5.9359Å. The Fourier shrink factor is then 10Å/5.9359Å = 1.684



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-Original file line number
+Diff line change
@@ Expand Up / @@ -4,7 +4,7 @@ Tutorial 2: Clustering based particle picking @@
-. Downscale your Tomogram to 10 Å
+. Rescale your Tomogram
     ---------------------------------
     .. include:: text_modules/downscale_clustering.rst
@@ Expand Down @@