Initial commit

.gitignore

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+_build/

LICENSE

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+MIT License
+
+Copyright (c) CodeRefinery
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

README.md

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+# Documentation example
+
+We use this example in the lesson
+[How to document your research software](https://coderefinery.github.io/documentation/).

doc/Makefile

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+# Minimal makefile for Sphinx documentation
+#
+
+# You can set these variables from the command line, and also
+# from the environment for the first two.
+SPHINXOPTS    ?=
+SPHINXBUILD   ?= sphinx-build
+SOURCEDIR     = .
+BUILDDIR      = _build
+
+# Put it first so that "make" without argument is like "make help".
+help:
+	@$(SPHINXBUILD) -M help "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O)
+
+.PHONY: help Makefile
+
+# Catch-all target: route all unknown targets to Sphinx using the new
+# "make mode" option.  $(O) is meant as a shortcut for $(SPHINXOPTS).
+%: Makefile
+	@$(SPHINXBUILD) -M $@ "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O)

doc/another-feature.md

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+# More features here
+
+
+## Some text
+
+Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod
+tempor incididunt ut labore et dolore magna aliqua. Ut enim ad minim veniam,
+quis nostrud exercitation ullamco laboris nisi ut aliquip ex ea commodo
+consequat. Duis aute irure dolor in reprehenderit in voluptate velit esse
+cillum dolore eu fugiat nulla pariatur. Excepteur sint occaecat cupidatat non
+proident, sunt in culpa qui officia deserunt mollit anim id est laborum.
+
+
+## Table
+
+| No.  |  Prime |
+| ---- | ------ |
+| 1    |  No    |
+| 2    |  Yes   |
+| 3    |  Yes   |
+| 4    |  No    |
+
+
+
+## Code blocks
+
+The following is a Python code block:
+```python
+  def hello():
+      print("Hello world")
+```
+
+And this is a C code block:
+```c
+#include <stdio.h>
+int main()
+{
+    printf("Hello, World!");
+    return 0;
+}
+```
+
+
+## Math
+
+This creates an equation:
+```{math}
+a^2 + b^2 = c^2
+```
+
+This is an in-line equation, {math}`a^2 + b^2 = c^2`, embedded in text.

doc/conf.py

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+# Configuration file for the Sphinx documentation builder.
+#
+# For the full list of built-in configuration values, see the documentation:
+# https://www.sphinx-doc.org/en/master/usage/configuration.html
+
+# -- Project information -----------------------------------------------------
+# https://www.sphinx-doc.org/en/master/usage/configuration.html#project-information
+
+project = 'Example'
+copyright = 'workshop participant'
+author = 'workshop participant'
+release = '0.1'
+
+
+# -- General configuration ---------------------------------------------------
+# https://www.sphinx-doc.org/en/master/usage/configuration.html#general-configuration
+
+extensions = ['myst_parser']
+
+templates_path = ['_templates']
+exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store']
+
+
+# -- Options for HTML output -------------------------------------------------
+# https://www.sphinx-doc.org/en/master/usage/configuration.html#options-for-html-output
+
+html_theme = 'sphinx_rtd_theme'
+html_static_path = ['_static']

doc/index.rst

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+.. Example documentation master file, created by
+   sphinx-quickstart on Sat Sep 23 20:35:12 2023.
+   You can adapt this file completely to your liking, but it should at least
+   contain the root `toctree` directive.
+
+Welcome to Example's documentation!
+===================================
+
+.. toctree::
+   :maxdepth: 2
+   :caption: Contents:
+
+   some-feature.md
+   another-feature.md

doc/make.bat

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+@ECHO OFF
+
+pushd %~dp0
+
+REM Command file for Sphinx documentation
+
+if "%SPHINXBUILD%" == "" (
+	set SPHINXBUILD=sphinx-build
+)
+set SOURCEDIR=.
+set BUILDDIR=_build
+
+%SPHINXBUILD% >NUL 2>NUL
+if errorlevel 9009 (
+	echo.
+	echo.The 'sphinx-build' command was not found. Make sure you have Sphinx
+	echo.installed, then set the SPHINXBUILD environment variable to point
+	echo.to the full path of the 'sphinx-build' executable. Alternatively you
+	echo.may add the Sphinx directory to PATH.
+	echo.
+	echo.If you don't have Sphinx installed, grab it from
+	echo.https://www.sphinx-doc.org/
+	exit /b 1
+)
+
+if "%1" == "" goto help
+
+%SPHINXBUILD% -M %1 %SOURCEDIR% %BUILDDIR% %SPHINXOPTS% %O%
+goto end
+
+:help
+%SPHINXBUILD% -M help %SOURCEDIR% %BUILDDIR% %SPHINXOPTS% %O%
+
+:end
+popd

doc/some-feature.md

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+# Some feature
+
+## Subsection
+
+Exciting documentation in here.
+Let's make a list (empty surrounding lines required):
+
+- item 1
+
+  - nested item 1
+  - nested item 2
+
+- item 2
+- item 3

src/README.md

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+Here can be the source code files for your project ...