Merge pull request #278 from Magritte-code/277-move-model-from-ci-pip…

…eline-to-somewhere-else-than-github

Found the original CI model again. Moved it to owncloud.

tests/benchmarks/numeric/import_phantom_3D_model.py

@@ -28,10 +28,11 @@ def import_phantom():
     model_file = os.path.join(modeldir, 'model_Phantom_3D.hdf5')   # Resulting Magritte model
     lamda_file = os.path.join(datadir, 'co.txt'               )   # Line data file
 
-    dump_link  = "https://github.com/Ensor-code/phantom-models/raw/main/Malfait+2021/v05e50/wind_v05e50?download="
-    setup_link = "https://raw.githubusercontent.com/Ensor-code/phantom-models/main/Malfait%2B2021/v05e50/wind.setup"
-    input_link = "https://raw.githubusercontent.com/Ensor-code/phantom-models/main/Malfait%2B2021/v05e50/wind.in"
     lamda_link = "https://home.strw.leidenuniv.nl/~moldata/datafiles/co.dat"
+    # dump_link = "https://owncloud.ster.kuleuven.be/index.php/s/qgxytfnqW7dSiLo/download/wind_00574"
+    dump_link = "https://owncloud.ster.kuleuven.be/index.php/s/Et6CXYpZwjBXsJe/download/wind_00350"
+    input_link = "https://owncloud.ster.kuleuven.be/index.php/s/w9tgWmC2CfkPm7p/download/wind.in"
+    setup_link = "https://owncloud.ster.kuleuven.be/index.php/s/ZP6KwiASYgAayaK/download/wind.setup"
 
     # %%capture
     subprocess.run(['wget', dump_link,  '--output-document', dump_file ])
@@ -44,6 +45,8 @@ def import_phantom():
     # !wget $lamda_link --output-document $lamda_file
 
     # Loading the data with plons
+    print("datadir: ", datadir)
+    print("dump_file: ", dump_file)
     setupData = plons.LoadSetup(datadir, "wind")
     dumpData  = plons.LoadFullDump(dump_file, setupData)
 

tests/benchmarks/numeric/run_phantom_3D_model_reduced.py

@@ -14,7 +14,7 @@
 import magritte.core     as magritte
 import magritte.plot as plot
 
-VERSION = "0.9.0"#reference version of Magritte to compare against; should correspond to a commited intensity file
+VERSION = "0.9.5"#reference version of Magritte to compare against; should correspond to a commited intensity file
 #starting from 0.9.0, we compute the intensity for 4 lines at the same time, instead of just a single line. This is still not a realistic usecase, but suffices for regression testing.
 
 path = os.path.dirname(os.path.realpath(__file__))
@@ -71,6 +71,15 @@ def run_model (nosave=True):
 
     reference_intensity = np.load(f'{datadir}{modelName}_NLTE_intensity_magritte_{VERSION}.npy')
     reldiff = tools.relative_error(reference_intensity, np.array(model.images[0].I))
+    # For debugging, plot the intensity and reference intensity
+    # plt.figure()
+    # plt.imshow(np.log10(np.array(model.images[0].I).reshape(256, 256, -1))[:, :, 10], origin='lower')
+    # plt.colorbar()
+    # plt.title('log10(intensity)')
+    # plt.figure()
+    # plt.imshow(np.log10(reference_intensity).reshape(256, 256, -1)[:, :, 10], origin='lower')
+    # plt.colorbar()
+    # plt.show()
 
     print(result)
     print("maximum relative difference: ", np.max(reldiff))#only for a few points a significant difference can be seen