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substitute setup.py with pyproject.toml #58

Merged
merged 18 commits into from
Jan 16, 2025
Merged

substitute setup.py with pyproject.toml #58

merged 18 commits into from
Jan 16, 2025

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mschwoer
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@mschwoer mschwoer commented Jan 14, 2025 •
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remove setup.py-based installing (needs to be tested still)

Misc:

  • substituted shell: bash -l {0} -> shell: bash -le {0} for easier debugging
  • added requirements handling like in alphadia (two mirrored files + tests)

Note: the versions bumped for gui were implicitly used already in the previous release:

image
(https://github.com/MannLabs/directlfq/actions/runs/11499226277/job/32006749669#logs)
(this was because the extra was gui and not gui-stable

@mschwoer mschwoer requested a review from ammarcsj January 14, 2025 14:17
@mschwoer mschwoer marked this pull request as draft January 14, 2025 14:29
Base automatically changed from add_bump_version_workflow to master January 14, 2025 14:51
mschwoer
mschwoer commented Jan 14, 2025
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tests/pytest/test_requirements.py
@@ -0,0 +1,131 @@
"""Test that the strict and loose requirements files are aligned."""
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code copied from alphaDIA

@mschwoer mschwoer marked this pull request as ready for review January 14, 2025 18:06
ammarcsj
ammarcsj reviewed Jan 15, 2025
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Thanks a lot! Installers and software execution worked correctly also for me

release/windows/build_installer_windows.ps1 Outdated
# Make sure you include the required extra packages and always use the stable or very-stable options!
pip install "dist/directlfq-0.3.1-dev0-py3-none-any.whl[stable, gui]"
python -m build
# Make sure you include the required extra packages and always use the stable options!
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does this comment still apply?

@mschwoer mschwoer mentioned this pull request Jan 16, 2025
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mschwoer
mschwoer commented Jan 16, 2025
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pyproject.toml
authors = [
{name = "Mann Labs", email = "opensource@alphapept.com"}
]
description = "An open-source Python package of the AlphaPept ecosystem"
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btw on github this reads Fast and accurate label-free quantification for small and very large numbers of proteomes .. @ammarcsj

@mschwoer mschwoer merged commit 1b62dff into master Jan 16, 2025
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@mschwoer mschwoer deleted the remove_setup_py branch January 16, 2025 13:22
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@ammarcsj ammarcsj ammarcsj approved these changes

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@mschwoer @ammarcsj