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Merge pull request #5 from rem1776/spack-update
add spack config yaml and template to generate dockerfile
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,82 @@ | ||
| #*********************************************************************** | ||
| # GNU Lesser General Public License | ||
| # | ||
| # This file is part of the GFDL FRE NetCDF tools package (FRE-NCTools). | ||
| # | ||
| # FRE-NCTools is free software: you can redistribute it and/or modify it under | ||
| # the terms of the GNU Lesser General Public License as published by | ||
| # the Free Software Foundation, either version 3 of the License, or (at | ||
| # your option) any later version. | ||
| # | ||
| # FRE-NCTools is distributed in the hope that it will be useful, but WITHOUT | ||
| # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or | ||
| # FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License | ||
| # for more details. | ||
| # | ||
| # You should have received a copy of the GNU Lesser General Public | ||
| # License along with FRE-NCTools. If not, see | ||
| # <http://www.gnu.org/licenses/>. | ||
| #*********************************************************************** | ||
| # Ryan Mulhall 2023 | ||
| # spack environment config to generate a dockerfile for the fre-nctools ci image. | ||
| # To generate a new dockerfile: | ||
| # | ||
| # <clone the spack repo if not already available> | ||
| # source spack/share/spack/setup-env.sh (setup scripts for most shells are also available) | ||
| # <cd to this repo> | ||
| # <fill in the /path/to/ in spack.yaml with the path you cloned the repo in> | ||
| # spack env create fnct-container-env spack.yaml | ||
| # spack env activate fnct-container-env | ||
| # spack containerize > Dockerfile | ||
| # | ||
| # For versions, spack packages will use the default (usually the newest but depends on whats compatible) | ||
| # Images should be tagged with gcc version used | ||
| spack: | ||
| specs: | ||
| - gcc | ||
| - mpich | ||
| - netcdf-c | ||
| - netcdf-fortran | ||
| - nccmp | ||
| concretizer: | ||
| unify: true | ||
| packages: | ||
| all: | ||
| compiler: [ gcc ] | ||
| config: | ||
| template_dirs: | ||
| - /path/to/fre-nctools-container/template | ||
| # container specific options | ||
| container: | ||
| format: docker | ||
| template: Dockerfile.template | ||
| images: | ||
| os: "rockylinux:9" | ||
| spack: develop | ||
| # labels for final image | ||
| labels: | ||
| maintainer: "Seth Underwood <Seth.Underwood@noaa.gov>" | ||
| copyright: "2021, 2022, 2023 GFDL" | ||
| license: "LGPL v3+" | ||
| gov.noaa.gfdl.version: "5.0.0" | ||
| vendor: "Geophysical Fluid Dynamics Laboratory" | ||
| gov.noaa.gfdl.release-date: "2024-01-10" | ||
| # TODO should strip binaries for size if possible | ||
| # currently causes linker issues with libgcc when true | ||
| strip: false | ||
| # Additional packages that are needed at (ci) runtime | ||
| # this is anything that doesn't need to be built from source | ||
| # pip installs would be added in the template instead | ||
| os_packages: | ||
| final: | ||
| - autoconf | ||
| - libtool | ||
| - make | ||
| - bats | ||
| - git | ||
| - libgomp | ||
| - python3 | ||
| - python3-numpy | ||
| - python3-pip | ||
| - python3-pytest | ||
|
|
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,32 @@ | ||
| #*********************************************************************** | ||
| # GNU Lesser General Public License | ||
| # | ||
| # This file is part of the GFDL FRE NetCDF tools package (FRE-NCTools). | ||
| # | ||
| # FRE-NCTools is free software: you can redistribute it and/or modify it under | ||
| # the terms of the GNU Lesser General Public License as published by | ||
| # the Free Software Foundation, either version 3 of the License, or (at | ||
| # your option) any later version. | ||
| # | ||
| # FRE-NCTools is distributed in the hope that it will be useful, but WITHOUT | ||
| # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or | ||
| # FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License | ||
| # for more details. | ||
| # | ||
| # You should have received a copy of the GNU Lesser General Public | ||
| # License along with FRE-NCTools. If not, see | ||
| # <http://www.gnu.org/licenses/>. | ||
| #*********************************************************************** | ||
| {% extends "container/Dockerfile" %} | ||
| {% block build_stage %} | ||
| {{ super() }} | ||
| {% endblock %} | ||
| {% block final_stage %} | ||
| {{ super() }} | ||
| # Install any needed pip packages | ||
| RUN pip install git+https://github.com/adcroft/numpypi.git && \ | ||
| pip install netCDF4 virtualenv | ||
| # Set compilers for mpich wrappers | ||
| ENV MPICH_FC=gfortran | ||
| ENV MPICH_CC=gcc | ||
| {% endblock %} |