A pipeline to analyze SSR/STR data using HipSTR (https://hipstr-tool.github.io/HipSTR). The current use case is to process Illumina SE data.
Assumes using the following container singularity pull docker://philpalmer/hipstr
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A snakemake pipeline to analyze SSR/STR data and call markers in VCF format using HipSTR (https://hipstr-tool.github.io/HipSTR/)
Nevada-Bioinformatics-Center/snakemake_ssr_workflow_hipstr
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A snakemake pipeline to analyze SSR/STR data and call markers in VCF format using HipSTR (https://hipstr-tool.github.io/HipSTR/)
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