DeepRVAT Pipeline Tests 🧬🧪💻🧑🔬 #498
bfclarkepipeline-tests.yml
on: push
Smoke-Annotation-Pipeline
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Run-Pipeline
33m 35s
Reference-Output-Pretrained-Regenie
/
Run-Pipeline
6m 47s
Smoke-Association-Testing-Pretrained-Regenie
/
Run-Pipeline
4m 11s
Smoke-Association-Testing-Training
/
Run-Pipeline
4m 27s
Smoke-Preprocessing-No-QC
/
Run-Pipeline
18m 21s
Smoke-Preprocessing-With-QC
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Run-Pipeline
22m 20s
Smoke-RunTraining
/
Run-Pipeline
4m 13s
Reference-Output-Training
/
Run-Pipeline
6m 29s
Smoke-Seed-Gene-Discovery
/
Run-Pipeline
4m 12s
Smoke-Association-Testing-Training-Regenie
/
Run-Pipeline
6m 31s
Reference-Output-Pretrained
/
Run-Pipeline
6m 56s
Smoke-Association-Testing-Pretrained
/
Run-Pipeline
4m 19s
Smoke-GenerateConfig-Training
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Run-Pipeline
4m 29s
Smoke-GenerateConfig-Training-AssociationTesting
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Run-Pipeline
4m 44s
Smoke-GenerateConfig-PreTrained
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Run-Pipeline
4m 14s
Pipeline-Annotation
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Run-Pipeline
13m 41s
Pipeline-Tests-Association-Testing-Pretrained-Regenie
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Run-Pipeline
58s
Pipeline-Tests-Association-Testing-Training
/
Run-Pipeline
42s
Pipeline-Tests-Preprocessing-No-QC
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Run-Pipeline
45s
Pipeline-Tests-Preprocessing-With-QC
/
Run-Pipeline
46s
Pipeline-Tests-RunTraining
/
Run-Pipeline
57s
Pipeline-Tests-Seed-Gene-Discovery
/
Run-Pipeline
34s
Pipeline-Tests-Training-Association-Testing-Regenie
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Run-Pipeline
38s
Pipeline-Tests-Training-Association-Testing
/
Run-Pipeline
58s
Annotations
6 errors and 53 warnings
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Pipeline-Tests-Seed-Gene-Discovery / Run-Pipeline
Process completed with exit code 1.
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Pipeline-Tests-Association-Testing-Training / Run-Pipeline
Process completed with exit code 1.
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Pipeline-Tests-Training-Association-Testing-Regenie / Run-Pipeline
Process completed with exit code 1.
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Pipeline-Tests-RunTraining / Run-Pipeline
Process completed with exit code 1.
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Pipeline-Tests-Association-Testing-Pretrained-Regenie / Run-Pipeline
Process completed with exit code 1.
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Pipeline-Tests-Training-Association-Testing / Run-Pipeline
Process completed with exit code 1.
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Smoke-Association-Testing-Pretrained-Regenie / Run-Pipeline
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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Smoke-Association-Testing-Pretrained-Regenie / Run-Pipeline
Failed to save: Unable to reserve cache with key micromamba-environment--linux-64-args-4f53cda-root-dcc80ee-file-321d31ff9a4aee59e377cecec7f526a81a34e0e8f7ea91fa5b84bd9da1e07538, another job may be creating this cache. More details: Cache already exists. Scope: refs/heads/feature/anngeno-integration, Key: micromamba-environment--linux-64-args-4f53cda-root-dcc80ee-file-321d31ff9a4aee59e377cecec7f526a81a34e0e8f7ea91fa5b84bd9da1e07538, Version: bfc2ce9b31b8972a88ac36bcd391ba81bdfaff004c48f84ff75b9afb4e540ef4
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Smoke-Association-Testing-Pretrained-Regenie / Run-Pipeline
Failed to save: Unable to reserve cache with key micromamba-downloads--linux-64, another job may be creating this cache. More details: Cache already exists. Scope: refs/heads/feature/anngeno-integration, Key: micromamba-downloads--linux-64, Version: fd589871226f2427db40904ab3f139f6e9fe542d5228eeb2a790fd83584854df
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Smoke-Seed-Gene-Discovery / Run-Pipeline
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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Smoke-Seed-Gene-Discovery / Run-Pipeline
Failed to save: Unable to reserve cache with key micromamba-downloads--linux-64, another job may be creating this cache. More details: Cache already exists. Scope: refs/heads/feature/anngeno-integration, Key: micromamba-downloads--linux-64, Version: fd589871226f2427db40904ab3f139f6e9fe542d5228eeb2a790fd83584854df
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Smoke-Seed-Gene-Discovery / Run-Pipeline
Failed to save: Unable to reserve cache with key micromamba-environment--linux-64-args-4f53cda-root-dcc80ee-file-321d31ff9a4aee59e377cecec7f526a81a34e0e8f7ea91fa5b84bd9da1e07538, another job may be creating this cache. More details: Cache already exists. Scope: refs/heads/feature/anngeno-integration, Key: micromamba-environment--linux-64-args-4f53cda-root-dcc80ee-file-321d31ff9a4aee59e377cecec7f526a81a34e0e8f7ea91fa5b84bd9da1e07538, Version: bfc2ce9b31b8972a88ac36bcd391ba81bdfaff004c48f84ff75b9afb4e540ef4
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Smoke-RunTraining / Run-Pipeline
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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Smoke-RunTraining / Run-Pipeline
Failed to save: Unable to reserve cache with key micromamba-downloads--linux-64, another job may be creating this cache. More details: Cache already exists. Scope: refs/heads/feature/anngeno-integration, Key: micromamba-downloads--linux-64, Version: fd589871226f2427db40904ab3f139f6e9fe542d5228eeb2a790fd83584854df
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Smoke-RunTraining / Run-Pipeline
Failed to save: Unable to reserve cache with key micromamba-environment--linux-64-args-4f53cda-root-dcc80ee-file-321d31ff9a4aee59e377cecec7f526a81a34e0e8f7ea91fa5b84bd9da1e07538, another job may be creating this cache. More details: Cache already exists. Scope: refs/heads/feature/anngeno-integration, Key: micromamba-environment--linux-64-args-4f53cda-root-dcc80ee-file-321d31ff9a4aee59e377cecec7f526a81a34e0e8f7ea91fa5b84bd9da1e07538, Version: bfc2ce9b31b8972a88ac36bcd391ba81bdfaff004c48f84ff75b9afb4e540ef4
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Smoke-GenerateConfig-PreTrained / Run-Pipeline
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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Smoke-GenerateConfig-PreTrained / Run-Pipeline
Failed to save: Unable to reserve cache with key micromamba-downloads--linux-64, another job may be creating this cache. More details: Cache already exists. Scope: refs/heads/feature/anngeno-integration, Key: micromamba-downloads--linux-64, Version: fd589871226f2427db40904ab3f139f6e9fe542d5228eeb2a790fd83584854df
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Smoke-GenerateConfig-PreTrained / Run-Pipeline
Failed to save: Unable to reserve cache with key micromamba-environment--linux-64-args-4f53cda-root-dcc80ee-file-321d31ff9a4aee59e377cecec7f526a81a34e0e8f7ea91fa5b84bd9da1e07538, another job may be creating this cache. More details: Cache already exists. Scope: refs/heads/feature/anngeno-integration, Key: micromamba-environment--linux-64-args-4f53cda-root-dcc80ee-file-321d31ff9a4aee59e377cecec7f526a81a34e0e8f7ea91fa5b84bd9da1e07538, Version: bfc2ce9b31b8972a88ac36bcd391ba81bdfaff004c48f84ff75b9afb4e540ef4
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Smoke-Association-Testing-Pretrained / Run-Pipeline
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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Smoke-Association-Testing-Pretrained / Run-Pipeline
Failed to save: Unable to reserve cache with key micromamba-downloads--linux-64, another job may be creating this cache. More details: Cache already exists. Scope: refs/heads/feature/anngeno-integration, Key: micromamba-downloads--linux-64, Version: fd589871226f2427db40904ab3f139f6e9fe542d5228eeb2a790fd83584854df
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Smoke-Association-Testing-Pretrained / Run-Pipeline
Failed to save: Unable to reserve cache with key micromamba-environment--linux-64-args-4f53cda-root-dcc80ee-file-321d31ff9a4aee59e377cecec7f526a81a34e0e8f7ea91fa5b84bd9da1e07538, another job may be creating this cache. More details: Cache already exists. Scope: refs/heads/feature/anngeno-integration, Key: micromamba-environment--linux-64-args-4f53cda-root-dcc80ee-file-321d31ff9a4aee59e377cecec7f526a81a34e0e8f7ea91fa5b84bd9da1e07538, Version: bfc2ce9b31b8972a88ac36bcd391ba81bdfaff004c48f84ff75b9afb4e540ef4
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Smoke-Association-Testing-Training / Run-Pipeline
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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Smoke-Association-Testing-Training / Run-Pipeline
Failed to save: Unable to reserve cache with key micromamba-downloads--linux-64, another job may be creating this cache. More details: Cache already exists. Scope: refs/heads/feature/anngeno-integration, Key: micromamba-downloads--linux-64, Version: fd589871226f2427db40904ab3f139f6e9fe542d5228eeb2a790fd83584854df
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Smoke-Association-Testing-Training / Run-Pipeline
Failed to save: Unable to reserve cache with key micromamba-environment--linux-64-args-4f53cda-root-dcc80ee-file-321d31ff9a4aee59e377cecec7f526a81a34e0e8f7ea91fa5b84bd9da1e07538, another job may be creating this cache. More details: Cache already exists. Scope: refs/heads/feature/anngeno-integration, Key: micromamba-environment--linux-64-args-4f53cda-root-dcc80ee-file-321d31ff9a4aee59e377cecec7f526a81a34e0e8f7ea91fa5b84bd9da1e07538, Version: bfc2ce9b31b8972a88ac36bcd391ba81bdfaff004c48f84ff75b9afb4e540ef4
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Smoke-GenerateConfig-Training / Run-Pipeline
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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Smoke-GenerateConfig-Training / Run-Pipeline
Failed to save: Unable to reserve cache with key micromamba-environment--linux-64-args-4f53cda-root-dcc80ee-file-321d31ff9a4aee59e377cecec7f526a81a34e0e8f7ea91fa5b84bd9da1e07538, another job may be creating this cache. More details: Cache already exists. Scope: refs/heads/feature/anngeno-integration, Key: micromamba-environment--linux-64-args-4f53cda-root-dcc80ee-file-321d31ff9a4aee59e377cecec7f526a81a34e0e8f7ea91fa5b84bd9da1e07538, Version: bfc2ce9b31b8972a88ac36bcd391ba81bdfaff004c48f84ff75b9afb4e540ef4
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Smoke-GenerateConfig-Training / Run-Pipeline
Failed to save: Unable to reserve cache with key micromamba-downloads--linux-64, another job may be creating this cache. More details: Cache already exists. Scope: refs/heads/feature/anngeno-integration, Key: micromamba-downloads--linux-64, Version: fd589871226f2427db40904ab3f139f6e9fe542d5228eeb2a790fd83584854df
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Smoke-GenerateConfig-Training-AssociationTesting / Run-Pipeline
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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Smoke-GenerateConfig-Training-AssociationTesting / Run-Pipeline
Failed to save: Unable to reserve cache with key micromamba-downloads--linux-64, another job may be creating this cache. More details: Cache already exists. Scope: refs/heads/feature/anngeno-integration, Key: micromamba-downloads--linux-64, Version: fd589871226f2427db40904ab3f139f6e9fe542d5228eeb2a790fd83584854df
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Smoke-GenerateConfig-Training-AssociationTesting / Run-Pipeline
Failed to save: Unable to reserve cache with key micromamba-environment--linux-64-args-4f53cda-root-dcc80ee-file-321d31ff9a4aee59e377cecec7f526a81a34e0e8f7ea91fa5b84bd9da1e07538, another job may be creating this cache. More details: Cache already exists. Scope: refs/heads/feature/anngeno-integration, Key: micromamba-environment--linux-64-args-4f53cda-root-dcc80ee-file-321d31ff9a4aee59e377cecec7f526a81a34e0e8f7ea91fa5b84bd9da1e07538, Version: bfc2ce9b31b8972a88ac36bcd391ba81bdfaff004c48f84ff75b9afb4e540ef4
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Pipeline-Tests-Seed-Gene-Discovery / Run-Pipeline
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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Reference-Output-Training / Run-Pipeline
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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Reference-Output-Training / Run-Pipeline
Failed to save: Unable to reserve cache with key micromamba-downloads--linux-64, another job may be creating this cache. More details: Cache already exists. Scope: refs/heads/feature/anngeno-integration, Key: micromamba-downloads--linux-64, Version: fd589871226f2427db40904ab3f139f6e9fe542d5228eeb2a790fd83584854df
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Reference-Output-Training / Run-Pipeline
Failed to save: Unable to reserve cache with key micromamba-environment--linux-64-args-4f53cda-root-dcc80ee-file-321d31ff9a4aee59e377cecec7f526a81a34e0e8f7ea91fa5b84bd9da1e07538, another job may be creating this cache. More details: Cache already exists. Scope: refs/heads/feature/anngeno-integration, Key: micromamba-environment--linux-64-args-4f53cda-root-dcc80ee-file-321d31ff9a4aee59e377cecec7f526a81a34e0e8f7ea91fa5b84bd9da1e07538, Version: bfc2ce9b31b8972a88ac36bcd391ba81bdfaff004c48f84ff75b9afb4e540ef4
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Smoke-Association-Testing-Training-Regenie / Run-Pipeline
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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Smoke-Association-Testing-Training-Regenie / Run-Pipeline
Failed to save: Unable to reserve cache with key micromamba-downloads--linux-64, another job may be creating this cache. More details: Cache already exists. Scope: refs/heads/feature/anngeno-integration, Key: micromamba-downloads--linux-64, Version: fd589871226f2427db40904ab3f139f6e9fe542d5228eeb2a790fd83584854df
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Pipeline-Tests-Association-Testing-Training / Run-Pipeline
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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Reference-Output-Pretrained-Regenie / Run-Pipeline
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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Reference-Output-Pretrained-Regenie / Run-Pipeline
Failed to save: Unable to reserve cache with key micromamba-downloads--linux-64, another job may be creating this cache. More details: Cache already exists. Scope: refs/heads/feature/anngeno-integration, Key: micromamba-downloads--linux-64, Version: fd589871226f2427db40904ab3f139f6e9fe542d5228eeb2a790fd83584854df
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Reference-Output-Pretrained-Regenie / Run-Pipeline
Failed to save: Unable to reserve cache with key micromamba-environment--linux-64-args-4f53cda-root-dcc80ee-file-321d31ff9a4aee59e377cecec7f526a81a34e0e8f7ea91fa5b84bd9da1e07538, another job may be creating this cache. More details: Cache already exists. Scope: refs/heads/feature/anngeno-integration, Key: micromamba-environment--linux-64-args-4f53cda-root-dcc80ee-file-321d31ff9a4aee59e377cecec7f526a81a34e0e8f7ea91fa5b84bd9da1e07538, Version: bfc2ce9b31b8972a88ac36bcd391ba81bdfaff004c48f84ff75b9afb4e540ef4
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Reference-Output-Pretrained / Run-Pipeline
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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Reference-Output-Pretrained / Run-Pipeline
Failed to save: Unable to reserve cache with key micromamba-environment--linux-64-args-4f53cda-root-dcc80ee-file-321d31ff9a4aee59e377cecec7f526a81a34e0e8f7ea91fa5b84bd9da1e07538, another job may be creating this cache. More details: Cache already exists. Scope: refs/heads/feature/anngeno-integration, Key: micromamba-environment--linux-64-args-4f53cda-root-dcc80ee-file-321d31ff9a4aee59e377cecec7f526a81a34e0e8f7ea91fa5b84bd9da1e07538, Version: bfc2ce9b31b8972a88ac36bcd391ba81bdfaff004c48f84ff75b9afb4e540ef4
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Reference-Output-Pretrained / Run-Pipeline
Failed to save: Unable to reserve cache with key micromamba-downloads--linux-64, another job may be creating this cache. More details: Cache already exists. Scope: refs/heads/feature/anngeno-integration, Key: micromamba-downloads--linux-64, Version: fd589871226f2427db40904ab3f139f6e9fe542d5228eeb2a790fd83584854df
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Pipeline-Tests-Training-Association-Testing-Regenie / Run-Pipeline
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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Pipeline-Tests-RunTraining / Run-Pipeline
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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Pipeline-Tests-Association-Testing-Pretrained-Regenie / Run-Pipeline
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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Pipeline-Tests-Training-Association-Testing / Run-Pipeline
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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Smoke-Preprocessing-No-QC / Run-Pipeline
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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Smoke-Preprocessing-No-QC / Run-Pipeline
Failed to save: Unable to reserve cache with key micromamba-environment--linux-64-args-4f53cda-root-dcc80ee-file-34fca0b51137e2739a0b709a4c77bdbd1820b5d497716e3b9acfc0d841556dbb, another job may be creating this cache. More details: Cache already exists. Scope: refs/heads/feature/anngeno-integration, Key: micromamba-environment--linux-64-args-4f53cda-root-dcc80ee-file-34fca0b51137e2739a0b709a4c77bdbd1820b5d497716e3b9acfc0d841556dbb, Version: 80b6046ab9f371642e381ef597401918dc7a5adb42934b489fdc49796fbe77f9
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Smoke-Preprocessing-No-QC / Run-Pipeline
Failed to save: Unable to reserve cache with key micromamba-downloads--linux-64, another job may be creating this cache. More details: Cache already exists. Scope: refs/heads/feature/anngeno-integration, Key: micromamba-downloads--linux-64, Version: fd589871226f2427db40904ab3f139f6e9fe542d5228eeb2a790fd83584854df
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Pipeline-Tests-Preprocessing-No-QC / Run-Pipeline
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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Smoke-Preprocessing-With-QC / Run-Pipeline
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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Smoke-Preprocessing-With-QC / Run-Pipeline
Failed to save: Unable to reserve cache with key micromamba-environment--linux-64-args-4f53cda-root-dcc80ee-file-34fca0b51137e2739a0b709a4c77bdbd1820b5d497716e3b9acfc0d841556dbb, another job may be creating this cache. More details: Cache already exists. Scope: refs/heads/feature/anngeno-integration, Key: micromamba-environment--linux-64-args-4f53cda-root-dcc80ee-file-34fca0b51137e2739a0b709a4c77bdbd1820b5d497716e3b9acfc0d841556dbb, Version: 80b6046ab9f371642e381ef597401918dc7a5adb42934b489fdc49796fbe77f9
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Smoke-Preprocessing-With-QC / Run-Pipeline
Failed to save: Unable to reserve cache with key micromamba-downloads--linux-64, another job may be creating this cache. More details: Cache already exists. Scope: refs/heads/feature/anngeno-integration, Key: micromamba-downloads--linux-64, Version: fd589871226f2427db40904ab3f139f6e9fe542d5228eeb2a790fd83584854df
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Pipeline-Tests-Preprocessing-With-QC / Run-Pipeline
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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Smoke-Annotation-Pipeline / Run-Pipeline
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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Smoke-Annotation-Pipeline / Run-Pipeline
Failed to save: Unable to reserve cache with key micromamba-downloads--linux-64, another job may be creating this cache. More details: Cache already exists. Scope: refs/heads/feature/anngeno-integration, Key: micromamba-downloads--linux-64, Version: fd589871226f2427db40904ab3f139f6e9fe542d5228eeb2a790fd83584854df
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Smoke-Annotation-Pipeline / Run-Pipeline
Failed to save: Unable to reserve cache with key micromamba-environment--linux-64-args-4f53cda-root-dcc80ee-file-59986ad231973e1d73a898d822a5854aae23c0cd8fc06b11edbd4a8b58a274ae, another job may be creating this cache. More details: Cache already exists. Scope: refs/heads/feature/anngeno-integration, Key: micromamba-environment--linux-64-args-4f53cda-root-dcc80ee-file-59986ad231973e1d73a898d822a5854aae23c0cd8fc06b11edbd4a8b58a274ae, Version: 7ca1c22dc51fa90a7ae3dcb614b5aba9e8cfeec93dbec06b5add58c513b1cf64
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Pipeline-Annotation / Run-Pipeline
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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Artifacts
Produced during runtime
| Name | Size | |
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completed_pretrained_outputs
Expired
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24.6 MB |
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completed_regenie_outputs
Expired
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64.8 KB |
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completed_training_outputs
Expired
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5.32 MB |
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