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Update smoke-tests.yml
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endast committed May 17, 2024
1 parent 7f9124e commit 3b48a25
Showing 1 changed file with 10 additions and 13 deletions.
23 changes: 10 additions & 13 deletions .github/workflows/smoke-tests.yml
Original file line number Diff line number Diff line change
Expand Up @@ -13,16 +13,13 @@ jobs:
python -m snakemake -n -j 2 --directory ./example \
--snakefile ./pipelines/run_training.snakefile --show-failed-logs

# Pipeline-Tests-RunTraining:
# needs: Smoke-RunTraining
# steps:
# uses: ./.github/workflows/run-pipeline.yml
# with:
# environment_file: ./deeprvat_env_no_gpu.yml
# name: Run run_training pipeline
# # There are no GPUs on the gh worker, so we disable it in the config
# prerun_cmd: "sed -i 's/gpus: 1/gpus: 0/' ./example/config.yaml"
# pipeline_cmd: |
# python -m snakemake -j 2 --directory ${{ github.workspace }}/example \
# --snakefile ${{ github.workspace }}/pipelines/run_training.snakefile --show-failed-logs -F
Pipeline-Tests-RunTraining:
uses: ./.github/workflows/run-pipeline.yml
with:
environment_file: ./deeprvat_env_no_gpu.yml
name: Run run_training pipeline
# There are no GPUs on the gh worker, so we disable it in the config
prerun_cmd: "sed -i 's/gpus: 1/gpus: 0/' ./example/config.yaml"
pipeline_cmd: |
python -m snakemake -j 2 --directory ${{ github.workspace }}/example \
--snakefile ${{ github.workspace }}/pipelines/run_training.snakefile --show-failed-logs -F

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