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BigStitcher
BigStitcher PublicImgLib2/BDV implementation of Stitching for large datasets
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multiview-reconstruction
multiview-reconstruction PublicSoftware for the reconstruction of multi-view microscopic acquisitions like Selective Plane Illumination Microscopy (SPIM) Data
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multiview-simulation
multiview-simulation PublicCode for simulating a multi-view acquisition including attenuation, convolution, reduced sampling and poission noise
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dl-cell-counting
dl-cell-counting PublicRepo contains the implementation of the count-ception CNN (Tensorflow + Keras)
Repositories
- multiview-reconstruction Public
Software for the reconstruction of multi-view microscopic acquisitions like Selective Plane Illumination Microscopy (SPIM) Data
- RS-FISH-Spark Public
Spark version of RS-FISH that can analyze large N5 volumes in a distributed fashion locally, on the cluster or in the cloud
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- bigdataviewer-core-movie Public Forked from bigdataviewer/bigdataviewer-core
ImgLib2-based viewer for registered SPIM stacks and more