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Becheler committed Feb 5, 2024
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18 changes: 10 additions & 8 deletions annotated.html
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<tr id="row_6_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structFixture__simple__tree.html" target="_self">Fixture_simple_tree</a></td><td class="desc"></td></tr>
<tr id="row_7_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structFixtureCases.html" target="_self">FixtureCases</a></td><td class="desc"></td></tr>
<tr id="row_8_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classHudsonAlgorithm.html" target="_self">HudsonAlgorithm</a></td><td class="desc"></td></tr>
<tr id="row_9_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structMyNode.html" target="_self">MyNode</a></td><td class="desc"></td></tr>
<tr id="row_10_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structMySpatialGrid.html" target="_self">MySpatialGrid</a></td><td class="desc"></td></tr>
<tr id="row_11_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structMyVisitor.html" target="_self">MyVisitor</a></td><td class="desc"></td></tr>
<tr id="row_12_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structNode.html" target="_self">Node</a></td><td class="desc">"Legacy" tree for testing </td></tr>
<tr id="row_13_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structtransition__matrix.html" target="_self">transition_matrix</a></td><td class="desc"></td></tr>
<tr id="row_14_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structtree__visitor.html" target="_self">tree_visitor</a></td><td class="desc"></td></tr>
<tr id="row_15_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structvertex__info.html" target="_self">vertex_info</a></td><td class="desc"></td></tr>
<tr id="row_16_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structvertex__t.html" target="_self">vertex_t</a></td><td class="desc"></td></tr>
<tr id="row_9_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structMyEdgeInfo.html" target="_self">MyEdgeInfo</a></td><td class="desc"></td></tr>
<tr id="row_10_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structMyNode.html" target="_self">MyNode</a></td><td class="desc"></td></tr>
<tr id="row_11_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structMySpatialGrid.html" target="_self">MySpatialGrid</a></td><td class="desc"></td></tr>
<tr id="row_12_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structMyVertexInfo.html" target="_self">MyVertexInfo</a></td><td class="desc"></td></tr>
<tr id="row_13_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structMyVisitor.html" target="_self">MyVisitor</a></td><td class="desc"></td></tr>
<tr id="row_14_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structNode.html" target="_self">Node</a></td><td class="desc">"Legacy" tree for testing </td></tr>
<tr id="row_15_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structtransition__matrix.html" target="_self">transition_matrix</a></td><td class="desc"></td></tr>
<tr id="row_16_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structtree__visitor.html" target="_self">tree_visitor</a></td><td class="desc"></td></tr>
<tr id="row_17_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structvertex__info.html" target="_self">vertex_info</a></td><td class="desc"></td></tr>
<tr id="row_18_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structvertex__t.html" target="_self">vertex_t</a></td><td class="desc"></td></tr>
</table>
</div><!-- directory -->
</div><!-- contents -->
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2 changes: 2 additions & 0 deletions annotated_dup.js
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[ "Fixture_simple_tree", "structFixture__simple__tree.html", "structFixture__simple__tree" ],
[ "FixtureCases", "structFixtureCases.html", "structFixtureCases" ],
[ "HudsonAlgorithm", "classHudsonAlgorithm.html", "classHudsonAlgorithm" ],
[ "MyEdgeInfo", "structMyEdgeInfo.html", "structMyEdgeInfo" ],
[ "MyNode", "structMyNode.html", "structMyNode" ],
[ "MySpatialGrid", "structMySpatialGrid.html", "structMySpatialGrid" ],
[ "MyVertexInfo", "structMyVertexInfo.html", "structMyVertexInfo" ],
[ "MyVisitor", "structMyVisitor.html", "structMyVisitor" ],
[ "Node", "structNode.html", "structNode" ],
[ "transition_matrix", "structtransition__matrix.html", "structtransition__matrix" ],
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4 changes: 2 additions & 2 deletions bound__policy_8hpp_source.html
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<div class="line"><a name="l00056"></a><span class="lineno"> 56</span>&#160; <span class="keywordtype">int</span> <a class="code" href="classquetzal_1_1geography_1_1sink.html">sink</a> = num_land_vertices;</div>
<div class="line"><a name="l00057"></a><span class="lineno"> 57</span>&#160; assert( <a class="code" href="classquetzal_1_1geography_1_1graph.html">graph</a>.num_vertices() == <a class="code" href="classquetzal_1_1geography_1_1sink.html">sink</a> + 1 );</div>
<div class="line"><a name="l00058"></a><span class="lineno"> 58</span>&#160; <span class="keywordflow">if</span> ( s &lt; <a class="code" href="classquetzal_1_1geography_1_1sink.html">sink</a> )</div>
<div class="line"><a name="l00059"></a><span class="lineno"> 59</span>&#160; <a class="code" href="structquetzal_1_1geography_1_1detail_1_1edge__construction.html">detail::edge_construction&lt;edge_property&gt;::delegate</a>(s, <a class="code" href="classquetzal_1_1geography_1_1sink.html">sink</a>, <a class="code" href="classquetzal_1_1geography_1_1graph.html">graph</a>); <span class="comment">// one-way ticket :(</span></div>
<div class="line"><a name="l00059"></a><span class="lineno"> 59</span>&#160; <a class="code" href="structquetzal_1_1geography_1_1detail_1_1edge__construction.html">detail::edge_construction&lt;edge_property&gt;::delegate</a>(s, <a class="code" href="classquetzal_1_1geography_1_1sink.html">sink</a>, <a class="code" href="classquetzal_1_1geography_1_1graph.html">graph</a>, grid); <span class="comment">// one-way ticket :(</span></div>
<div class="line"><a name="l00060"></a><span class="lineno"> 60</span>&#160; }</div>
<div class="line"><a name="l00061"></a><span class="lineno"> 61</span>&#160;};</div>
<div class="line"><a name="l00062"></a><span class="lineno"> 62</span>&#160; </div>
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<div class="line"><a name="l00100"></a><span class="lineno"> 100</span>&#160; {</div>
<div class="line"><a name="l00101"></a><span class="lineno"> 101</span>&#160; symmetricIndex = s - width + 1;</div>
<div class="line"><a name="l00102"></a><span class="lineno"> 102</span>&#160; }</div>
<div class="line"><a name="l00103"></a><span class="lineno"> 103</span>&#160; <a class="code" href="structquetzal_1_1geography_1_1detail_1_1edge__construction.html">detail::edge_construction&lt;edge_property&gt;::delegate</a>(s, symmetricIndex, <a class="code" href="classquetzal_1_1geography_1_1graph.html">graph</a>);</div>
<div class="line"><a name="l00103"></a><span class="lineno"> 103</span>&#160; <a class="code" href="structquetzal_1_1geography_1_1detail_1_1edge__construction.html">detail::edge_construction&lt;edge_property&gt;::delegate</a>(s, symmetricIndex, <a class="code" href="classquetzal_1_1geography_1_1graph.html">graph</a>, grid);</div>
<div class="line"><a name="l00104"></a><span class="lineno"> 104</span>&#160; }</div>
<div class="line"><a name="l00105"></a><span class="lineno"> 105</span>&#160;};</div>
<div class="line"><a name="l00106"></a><span class="lineno"> 106</span>&#160; </div>
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2 changes: 1 addition & 1 deletion classes.html
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<dd><a class="el" href="classquetzal_1_1geography_1_1landscape.html">landscape</a> (<a class="el" href="namespacequetzal_1_1geography.html">quetzal::geography</a>)</dd><dd><a class="el" href="structquetzal_1_1geography_1_1latlon.html">latlon</a> (<a class="el" href="namespacequetzal_1_1geography.html">quetzal::geography</a>)</dd><dd><a class="el" href="classquetzal_1_1geography_1_1gdalcpp_1_1Layer.html">Layer</a> (quetzal::geography::gdalcpp)</dd><dd><a class="el" href="structquetzal_1_1expressive_1_1literal__factory.html">literal_factory</a> (<a class="el" href="namespacequetzal_1_1expressive.html">quetzal::expressive</a>)</dd><dd><a class="el" href="structquetzal_1_1expressive_1_1literal__t.html">literal_t</a> (<a class="el" href="namespacequetzal_1_1expressive.html">quetzal::expressive</a>)</dd><dd><a class="el" href="classquetzal_1_1format_1_1genetics_1_1Loader.html">Loader</a> (<a class="el" href="namespacequetzal_1_1format_1_1genetics.html">quetzal::format::genetics</a>)</dd><dd><a class="el" href="structquetzal_1_1demography_1_1dispersal__kernel_1_1logistic.html">logistic</a> (<a class="el" href="namespacequetzal_1_1demography_1_1dispersal__kernel.html">quetzal::demography::dispersal_kernel</a>)</dd><dd><a class="el" href="structquetzal_1_1demography_1_1dispersal__kernel_1_1lognormal.html">lognormal</a> (<a class="el" href="namespacequetzal_1_1demography_1_1dispersal__kernel.html">quetzal::demography::dispersal_kernel</a>)</dd><dd><a class="el" href="structquetzal_1_1geography_1_1lonlat.html">lonlat</a> (<a class="el" href="namespacequetzal_1_1geography.html">quetzal::geography</a>)</dd></dl>
<dl class="classindex even">
<dt class="alphachar"><a name="letter_M">M</a></dt>
<dd><a class="el" href="structquetzal_1_1expressive_1_1make__expression__t.html">make_expression_t</a> (<a class="el" href="namespacequetzal_1_1expressive.html">quetzal::expressive</a>)</dd><dd><a class="el" href="structquetzal_1_1detail_1_1make__undirected.html">make_undirected</a> (quetzal::detail)</dd><dd><a class="el" href="structquetzal_1_1detail_1_1make__undirected_3_01boost_1_1adjacency__list_3_01A_00_01B_00_01C_00_01D_00_01E_00_01F_01_4_01_4.html">make_undirected&lt; boost::adjacency_list&lt; A, B, C, D, E, F &gt; &gt;</a> (quetzal::detail)</dd><dd><a class="el" href="structquetzal_1_1detail_1_1make__undirected_3_01quetzal_1_1coalescence_1_1k__ary__tree_3_01V_00_01E_01_4_01_4.html">make_undirected&lt; quetzal::coalescence::k_ary_tree&lt; V, E &gt; &gt;</a> (quetzal::detail)</dd><dd><a class="el" href="structquetzal_1_1format_1_1genetics_1_1Marker__Descriptor.html">Marker_Descriptor</a> (<a class="el" href="namespacequetzal_1_1format_1_1genetics.html">quetzal::format::genetics</a>)</dd><dd><a class="el" href="classquetzal_1_1demography_1_1demographic__policy_1_1mass__based.html">mass_based</a> (<a class="el" href="namespacequetzal_1_1demography_1_1demographic__policy.html">quetzal::demography::demographic_policy</a>)</dd><dd><a class="el" href="classquetzal_1_1polymorphism_1_1fuzzy__transfer__distance_1_1Matrix.html">Matrix</a> (<a class="el" href="namespacequetzal_1_1polymorphism_1_1fuzzy__transfer__distance.html">quetzal::polymorphism::fuzzy_transfer_distance</a>)</dd><dd><a class="el" href="structboost_1_1accumulators_1_1impl_1_1mean__accumulator.html">mean_accumulator</a> (<a class="el" href="namespaceboost_1_1accumulators_1_1impl.html">boost::accumulators::impl</a>)</dd><dd><a class="el" href="classquetzal_1_1geography_1_1mirror.html">mirror</a> (<a class="el" href="namespacequetzal_1_1geography.html">quetzal::geography</a>)</dd><dd><a class="el" href="classquetzal_1_1polymorphism_1_1fuzzy__transfer__distance_1_1Munkres.html">Munkres</a> (<a class="el" href="namespacequetzal_1_1polymorphism_1_1fuzzy__transfer__distance.html">quetzal::polymorphism::fuzzy_transfer_distance</a>)</dd><dd><a class="el" href="structMyNode.html">MyNode</a></dd><dd><a class="el" href="structMySpatialGrid.html">MySpatialGrid</a></dd><dd><a class="el" href="structMyVisitor.html">MyVisitor</a></dd></dl>
<dd><a class="el" href="structquetzal_1_1expressive_1_1make__expression__t.html">make_expression_t</a> (<a class="el" href="namespacequetzal_1_1expressive.html">quetzal::expressive</a>)</dd><dd><a class="el" href="structquetzal_1_1detail_1_1make__undirected.html">make_undirected</a> (quetzal::detail)</dd><dd><a class="el" href="structquetzal_1_1detail_1_1make__undirected_3_01boost_1_1adjacency__list_3_01A_00_01B_00_01C_00_01D_00_01E_00_01F_01_4_01_4.html">make_undirected&lt; boost::adjacency_list&lt; A, B, C, D, E, F &gt; &gt;</a> (quetzal::detail)</dd><dd><a class="el" href="structquetzal_1_1detail_1_1make__undirected_3_01quetzal_1_1coalescence_1_1k__ary__tree_3_01V_00_01E_01_4_01_4.html">make_undirected&lt; quetzal::coalescence::k_ary_tree&lt; V, E &gt; &gt;</a> (quetzal::detail)</dd><dd><a class="el" href="structquetzal_1_1format_1_1genetics_1_1Marker__Descriptor.html">Marker_Descriptor</a> (<a class="el" href="namespacequetzal_1_1format_1_1genetics.html">quetzal::format::genetics</a>)</dd><dd><a class="el" href="classquetzal_1_1demography_1_1demographic__policy_1_1mass__based.html">mass_based</a> (<a class="el" href="namespacequetzal_1_1demography_1_1demographic__policy.html">quetzal::demography::demographic_policy</a>)</dd><dd><a class="el" href="classquetzal_1_1polymorphism_1_1fuzzy__transfer__distance_1_1Matrix.html">Matrix</a> (<a class="el" href="namespacequetzal_1_1polymorphism_1_1fuzzy__transfer__distance.html">quetzal::polymorphism::fuzzy_transfer_distance</a>)</dd><dd><a class="el" href="structboost_1_1accumulators_1_1impl_1_1mean__accumulator.html">mean_accumulator</a> (<a class="el" href="namespaceboost_1_1accumulators_1_1impl.html">boost::accumulators::impl</a>)</dd><dd><a class="el" href="classquetzal_1_1geography_1_1mirror.html">mirror</a> (<a class="el" href="namespacequetzal_1_1geography.html">quetzal::geography</a>)</dd><dd><a class="el" href="classquetzal_1_1polymorphism_1_1fuzzy__transfer__distance_1_1Munkres.html">Munkres</a> (<a class="el" href="namespacequetzal_1_1polymorphism_1_1fuzzy__transfer__distance.html">quetzal::polymorphism::fuzzy_transfer_distance</a>)</dd><dd><a class="el" href="structMyEdgeInfo.html">MyEdgeInfo</a></dd><dd><a class="el" href="structMyNode.html">MyNode</a></dd><dd><a class="el" href="structMySpatialGrid.html">MySpatialGrid</a></dd><dd><a class="el" href="structMyVertexInfo.html">MyVertexInfo</a></dd><dd><a class="el" href="structMyVisitor.html">MyVisitor</a></dd></dl>
<dl class="classindex odd">
<dt class="alphachar"><a name="letter_N">N</a></dt>
<dd><a class="el" href="structquetzal_1_1demography_1_1dispersal__kernel_1_1negative__exponential.html">negative_exponential</a> (<a class="el" href="namespacequetzal_1_1demography_1_1dispersal__kernel.html">quetzal::demography::dispersal_kernel</a>)</dd><dd><a class="el" href="classquetzal_1_1demography_1_1demographic__policy_1_1mass__based_1_1neighboring__migration.html">mass_based::neighboring_migration</a> (<a class="el" href="namespacequetzal_1_1demography_1_1demographic__policy.html">quetzal::demography::demographic_policy</a>)</dd><dd><a class="el" href="classquetzal_1_1coalescence_1_1container_1_1Network.html">Network</a> (<a class="el" href="namespacequetzal_1_1coalescence_1_1container.html">quetzal::coalescence::container</a>)</dd><dd><a class="el" href="classquetzal_1_1coalescence_1_1network.html">network</a> (<a class="el" href="namespacequetzal_1_1coalescence.html">quetzal::coalescence</a>)</dd><dd><a class="el" href="classquetzal_1_1coalescence_1_1network_3_01no__property_00_01no__property_01_4.html">network&lt; no_property, no_property &gt;</a> (<a class="el" href="namespacequetzal_1_1coalescence.html">quetzal::coalescence</a>)</dd><dd><a class="el" href="classquetzal_1_1coalescence_1_1detail_1_1network__common.html">network_common</a> (<a class="el" href="namespacequetzal_1_1coalescence_1_1detail.html">quetzal::coalescence::detail</a>)</dd><dd><a class="el" href="classquetzal_1_1coalescence_1_1newick__with__distance__to__parent.html">newick_with_distance_to_parent</a> (<a class="el" href="namespacequetzal_1_1coalescence.html">quetzal::coalescence</a>)</dd><dd><a class="el" href="classquetzal_1_1coalescence_1_1newick__with__distance__to__parent__and__leaf__name.html">newick_with_distance_to_parent_and_leaf_name</a> (<a class="el" href="namespacequetzal_1_1coalescence.html">quetzal::coalescence</a>)</dd><dd><a class="el" href="structNode.html">Node</a></dd><dd><a class="el" href="structquetzal_1_1format_1_1newick_1_1ast_1_1node.html">node</a> (quetzal::format::newick::ast)</dd><dd><a class="el" href="classquetzal_1_1utils_1_1null__output__iterator.html">null_output_iterator</a> (<a class="el" href="namespacequetzal_1_1utils.html">quetzal::utils</a>)</dd></dl>
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