Merge pull request #145 from chaselgrove/fixes

Minor fixes

content/about/collaborators.md

@@ -58,7 +58,7 @@ The P41 Center Collaborative Projects (CPs) serve as technology drivers, users,
 - CP4: [COINSTAC: Worldwide Analysis of Valence System Brain Circuits](https://coinstac.org/)
     - [Vince Calhoun](https://www.ece.gatech.edu/faculty-staff-directory/vince-calhoun), [Jessica Turner](https://trendscenter.org/jessica-turner/), [Theodorus Van Erp](https://www.faculty.uci.edu/profile.cfm?faculty_id=5812) (PIs)
     - Institutions: Georgia State University/UC Irvine
-- CP5: [OPENNEURO: An Open Archive for Analysis and Sharing of Brain Initiative Data](https://openneuro.org/)
+- CP5: [OpenNeuro: An Open Archive for Analysis and Sharing of Brain Initiative Data](https://openneuro.org/)
     - [Russell Poldrack](https://profiles.stanford.edu/russell-poldrack) (PI)
     - Institution: Stanford University
 - CP6: [Brainlife: Lowering the Barrier of Entry to Network Neuroscience](https://brainlife.io/about/)

content/about/webinars.md

@@ -20,12 +20,12 @@ No Webinar ~ Happy New Year!
 ## Webinar Presentations to Date
 
 ### Friday, December 6, 2024 at 2pm EST
-Our featured speaker this month is ReproNim/INCF Fellowship alum [Johanna Bayer](https://nl.linkedin.com/in/johanna-bayer) who joins us from the [Predictive Clinical Neuroscience Group](https://predictiveclinicalneuroscience.com/),(Donders Institute and RadboudUMC, Netherlands). Johanna discusses normative modelling of neuroimaging data using the Predictive Clinical Neuroscience toolkit ([pcntoolkit](https://pcntoolkit.readthedocs.io/en/latest/)), in her presentation: "Normative modelling using the pcntoolkit – the what when and why.”
+Our featured speaker this month is ReproNim/INCF Fellowship alum [Johanna Bayer](https://nl.linkedin.com/in/johanna-bayer) who joins us from the [Predictive Clinical Neuroscience Group](https://predictiveclinicalneuroscience.com/),(Donders Institute and RadboudUMC, Netherlands). Johanna discusses normative modeling of neuroimaging data using the Predictive Clinical Neuroscience toolkit ([pcntoolkit](https://pcntoolkit.readthedocs.io/en/latest/)), in her presentation: "Normative modelling using the pcntoolkit – the what when and why.”
 
 [Video Presentation](https://youtu.be/u_ZGVs_B6VY) and [Slides](https://github.com/likeajumprope/Repronim_webinar_normative_modelling) are now available
 
 ### Friday, November 1, 2024 at 2pm EDT
-We welcome [Stefano Moia](https://cris.maastrichtuniversity.nl/en/persons/stefano-moia) and colleagues Inês Esteves (Instituto Superior Técnico, Universidade de Lisboa - Lisbon), Rebecca Clemens (Northwestern University - Chicago), Mary Miedema (McGill University - Montreal), and Marie-Eve Picard (Université de Montréal - Montreal) for a special introduction to the [PhysioPy](https://physiopy.github.io/) project: "The physiopy Community: working towards accessible and reproducible physiological data integration in neuroimaging studies"
+We welcome [Stefano Moia](https://cris.maastrichtuniversity.nl/en/persons/stefano-moia) and colleagues Inês Esteves (Instituto Superior Técnico, Universidade de Lisboa - Lisbon), Rebecca Clemens (Northwestern University - Chicago), Mary Miedema (McGill University - Montreal), and Marie-Eve Picard (Université de Montréal - Montreal) for a special introduction to the [Physiopy](https://physiopy.github.io/) project: "The physiopy Community: working towards accessible and reproducible physiological data integration in neuroimaging studies"
 
 [Video Presentation](https://youtu.be/4euIogu-TnA) is now available
 
@@ -68,7 +68,7 @@ ReproNim faculty member [Jeffrey Grethe](https://www.linkedin.com/in/jgrethe) (U
 
 [Video Presentation](https://youtu.be/SrA-3MZ4tw4) is now available.
 
-### Friday, January 5, 2024 - Cancelled due to unforeseen circumstances
+### Friday, January 5, 2024 - Canceled due to unforeseen circumstances
 
 ### Friday, December 1, 2023
 [Daniel Asay](https://cbs.fas.harvard.edu/directory/6975/) joins us from the Harvard University Center for Brain Science. He discusses his work with Tim O'Keefe and colleagues on open-source quality control pipelines (XNAT 1.8+ plugins), particularly for diffusion weighted imaging, in his presentation: DWIQC: Diffusion Imaging Quality Control Pipeline
@@ -112,7 +112,7 @@ Special guest speaker [Pradeep Raamana](https://crossinvalidation.com/about-prad
 ### Thursday, February 2, 2023 (live) and Friday, February 3 (re-broadcast)
 Special guest speaker [Steffen Bollmann](https://researchers.uq.edu.au/researcher/11402) joins us from University of Queensland with a presentation on [Neurodesk](https://www.neurodesk.org/): An accessible, flexible, and portable data analysis environment for reproducible neuroimaging.
 
-[Video presention](https://www.youtube.com/watch?v=HY-TqE6I2oo) is now available.
+[Video presentation](https://www.youtube.com/watch?v=HY-TqE6I2oo) is now available.
 
 ### Friday, January 6, 2023 at 2pm EDT
 Our own [David Kennedy](https://profiles.umassmed.edu/display/130002) (ReproNim PI, UMass Chan Medical School) and members of the ReproNim Team discuss The State of the ReproNim: An Update on Center Activities
@@ -281,7 +281,7 @@ ReproNim investigator JB Poline discusses "How Do I Teach or Learn Reproducible
 Both the [Video Presentation](https://www.youtube.com/watch?v=2JJ0AqYH1iQ), and [Slides](https://docs.google.com/presentation/d/1vSrK3Du0iggi4x6NW1jUG-WsJJKIb8EnU9OeP2IpZAk/edit#slide=id.p1) are now available
 
 ### Friday February 7, 2020 at 2pm EST
-ReproNIm investigator Jeff Grethe introduces [InterLex](https://scicrunch.org/nidm-terms/interlex/dashboard) in his presentation "Damn it Jim, I am a researcher not an ontologist: Exploring and using terminologies"
+ReproNim investigator Jeff Grethe introduces [InterLex](https://scicrunch.org/nidm-terms/interlex/dashboard) in his presentation "Damn it Jim, I am a researcher not an ontologist: Exploring and using terminologies"
 
 Both the [Video Presentation](https://youtu.be/4qcRkqkTOFk), and
 [Slides](https://drive.google.com/open?id=1NhxbgmqT5Pd8n1SMqEhUjd5Fl6UAujOwL9am7icl61c) are available
@@ -293,7 +293,7 @@ Both the [Video Presentation](https://www.youtube.com/watch?v=d5KbmuhvnwE) and
 [Slides](https://drive.google.com/open?id=1QzcywXi1ThawyxJQLFVGG8hls9H0trOC) are available
 
 ### Friday, December 6, at 2pm EST
-ReproNim investigator Yaroslav Halchenko and colleagues present "Taking Control of your DICOM Data: ReproIn/Heudiconv Tools"
+ReproNim investigator Yaroslav Halchenko and colleagues present "Taking Control of your DICOM Data: ReproIn/HeuDiConv Tools"
 
 Both the [Video Presentation](https://www.youtube.com/watch?v=j2SKX37-w4c&list=PLs3CA4ShM1DUX0nTMKfoB8Z6kdrZpByLa&index=5&t=0s) and 
 [Slides](https://docs.google.com/presentation/d/14UNWQVY49c9Xc-7sj1FkoILXnt-wYjW404oqT-FtCW8/edit#slide=id.p) are available

content/fellowship/_index.md

@@ -19,7 +19,7 @@ We typically award five to ten fellowships per fellowship year, with the total n
 
 ## ReproNim/INCF Fellowship Benefits
 
-- Each Fellowship class has a hybrid kickoff event held in conjunction with the OHBM BrainHack, immediately preceding the annual [OHBM Conference](https://www.humanbrainmapping.org/i4a/pages/index.cfm?pageid=3298) wherever that conference is being held on a given year. Some travel assistance may be available to the Fellows.
+- Each Fellowship class has a hybrid kickoff event held in conjunction with the OHBM Brainhack, immediately preceding the annual [OHBM Conference](https://www.humanbrainmapping.org/i4a/pages/index.cfm?pageid=3298) wherever that conference is being held on a given year. Some travel assistance may be available to the Fellows.
 - Conceptual and hands-on experience in various aspects of reproducible neuroimaging, including computational technologies, pipelines/workflows, data handling and statistics.
 - Ongoing Mentorship with ReproNim faculty throughout the year and as needed going forward
 - Networking and Collaborative opportunities, including ReproNim faculty, Fellows, and Alumni

content/resources/_index.md

@@ -7,4 +7,4 @@ This section is dedicated to **how** to make use of the ReproNim ecosystem, comp
 
 If you are new to the concept of ReproNim's mission to increase reproducible practices in neuroimaging, we suggest you familiarize yourself with [why neuroimaging should be reproducible](/about/why/) and [ReproNim's Principles of Reproducible Neuroimaging](/about/in-practice/). 
 
-If you are unfamiliar with ReproNim and its approach, we suggest you visit [Getting started with ReproNim](/resources/getting-started/) for a general orientation to the website, along with a set of user stories that illustrate how ReproNim can address data and software management issues you may encounter in your current neuroimaging worklow
+If you are unfamiliar with ReproNim and its approach, we suggest you visit [Getting started with ReproNim](/resources/getting-started/) for a general orientation to the website, along with a set of user stories that illustrate how ReproNim can address data and software management issues you may encounter in your current neuroimaging workflow.

content/resources/getting-started/_index.md

@@ -86,7 +86,7 @@ ReproNim can help Sarah learn more about data and software management and other
 * Implementing software management basics:  [Using Git to manage workflow/pipeline versions](/resources/tutorials/git/)
   * Principle:  Software management
   * Foundations:  Versioning
-* Publishing your work as a “Re-executable paper”( \= text, data, code):  Standards-based data sharing through Open Neuro
+* Publishing your work as a “Re-executable paper”( \= text, data, code):  Standards-based data sharing through OpenNeuro
   * Principle:  Publishing re-executable papers
   * Foundations: Standards, Annotation
 
@@ -109,7 +109,7 @@ ReproNim can help Richard learn how standards such as BIDS and NIDM can help wit
 * Advanced data management: Putting your derived data into BIDS derivatives and creating a semantically-enriched  data dictionary using NIDM, a standard for annotating neuroimaging data
   * Principles:  Data management
   * Foundations:  Standards, annotation
-* Working with containers:  Using NeuroDocker to containerize computational
+* Working with containers:  Using Neurodocker to containerize computational
   * Principles:  Re-executability
 * Advanced data and software management: [DataLad containers/run \+, YODA principles](/resources/tutorials/repronim-containers/)
   * Principles:  Re-executability

content/resources/training/_index.md

@@ -18,7 +18,7 @@ We also **partner with groups** to create tailored training programs that addres
 Our Associated training programs include [ReproRehab](https://www.reprorehab.usc.edu/), an NIH-funded training fellowship program (USC) designed to support reproducible research in the physical rehabilitation community, under the founding leadership of ReproNim/INCF Fellowship alumna, Sook-Lei Liew (2020-2021 class).
 We have also partnered with the Adolescent Brain Cognitive Development (ABCD) Study Research Consortium, in collaboration with Angela Laird (FIU), to create [ABCD-ReproNim](https://www.abcd-repronim.org/), a 12 week online course on reproducible data analyses with ABCD data (big data).
 
-In addition, we and our Fellows have generated a great deal of training materials which are being catalogued in our **ReproInventory**.
+In addition, we and our Fellows have generated a great deal of training materials which are being cataloged in our **ReproInventory**.
 
 Our **ReproNim ‘First Fridays’ monthly Webinar Series** features important efforts in reproducibility, from both ReproNim and others. See our [ReproNim channel](https://www.youtube.com/channel/UCGX2sXmEgDuUGWHDSiT1NdQ/videos) to view our entire collection of webinars to date.
 

content/resources/tutorials/data-dictionary.md

@@ -108,7 +108,7 @@ Full Name: Age
 Description: Age of participant at time of scan
 ```
 
-#### **Step 4b: Choose a Datatype
+#### Step 4b: Choose a Datatype
 
 Select a datatype from the predefined list: